Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00249 ATGATCGATGCTATCAAGGCTGCGATCGGCGATGCCGTTCTCACTTCCATGTGGATTTTCTGCGCTTCGTCTCTTGGAGTTCTTACCTCCGTCCTGTACTCGGTTGCCGGTGTTTATGGCATTCCGCTTCACCCGCTTTTTATCACTACTGCTCTCGTCTTCGTTCTTGTTTTCGTTTTTAATATAATTGGCGCTGCCATGGGTGGGGCTAGCTTTAATCCCACTGCTACTGCCGCTTTCTATGCTGCTGGCGTTGGTCCGACCTCTCTTTTCTCCATGGCTCTCCGTTTCCCTGCTCAGGCTGCTGGTGCGGTTGCTGGTGCAGTGGCGATCAAGGAGGTGATGCCAATACAGTACAAGCACATGCTTGGTGGACCTTCTCTAAAAGTTGACATTCATTCTGGAGCCACAGCTGAAGGAGTTTTGACATTTCTAATCAGTTTTGCTGTTCTTCTAATTGTACTCAGAGGCCCCTCCAGTCCAGTTATTCAAACATGGTTGCTGGCAGTGGCTACCGTAGCGTTAATCGTTGCTGGTTCCGATTACACAGGACCTTCCATGAATCCTGCAAATGCGTTTGGATGGGCATATCTAAACAACATGCACGATACATGGGAGCAGTTGTACGTGTACTGGATCGCCCCGTTCATAGGAGCCATTTTGGCTGCTTGGCTTTTCAGAATCATCTTCCCACCACCAGCCCCAGCCCCAGCCAAGCAGAAGAAAGCTTGA 732 49.86 MIDAIKAAIGDAVLTSMWIFCASSLGVLTSVLYSVAGVYGIPLHPLFITTALVFVLVFVFNIIGAAMGGASFNPTATAAFYAAGVGPTSLFSMALRFPAQAAGAVAGAVAIKEVMPIQYKHMLGGPSLKVDIHSGATAEGVLTFLISFAVLLIVLRGPSSPVIQTWLLAVATVALIVAGSDYTGPSMNPANAFGWAYLNNMHDTWEQLYVYWIAPFIGAILAAWLFRIIFPPPAPAPAKQKKA 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3548976 3553275 + CmaCh03G002490.1 Cma03g00249 289820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00249 243 Pfam Major intrinsic protein 3 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g00249 243 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g00249 243 PRINTS Major intrinsic protein family signature 53 77 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g00249 243 PRINTS Major intrinsic protein family signature 92 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g00249 243 PRINTS Major intrinsic protein family signature 138 156 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g00249 243 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g00249 243 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma03g00249 243 Gene3D Glycerol uptake facilitator protein. 2 238 IPR023271 -
Cma03g00249 243 PANTHER AQUAPORIN SIP1-1 3 242 - -
Cma03g00249 243 PANTHER AQUAPORIN SIP1-1 3 242 IPR044222 GO:0015250
Cma03g00249 243 SUPERFAMILY Aquaporin-like 4 239 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00249 Cma06g00045 CCT
Cma03g00249 Cma07g01173 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00249 Cma-Chr3:3548976 Cma06g00045 Cma-Chr6:256302 5.29E-37 dispersed
Cma03g00249 Cma-Chr3:3548976 Cma07g01173 Cma-Chr7:6432221 1.02E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00249 K09875 - csv:101220534 412.149