Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00250 ATGAACGAAATTGTGGCATTACTTACAATAGGAGAGCTGGATCCGACTCCCGAAACACCGCAGTCCTTGAAGGCTCCCGCTGCCTCCAATTCCACTGGAAACGGTCAGATCCGTTACCGATCTCCGTCTTCCGCCGAGCTTCTTGACGGCCAATCGGCGTCTCTTCCACTTCAAGATCAACAGAAACTACTTCAGTTGGAGTTTGACAAGATGCATAAACGTCCCGGGAAGCAACAATCGGAATCATTGTCCAACAAGATCTATAGATTCAGAGGGGTGTTATTGCTCACCTCTCTTTCTCTTTTCCTTATCTTCTTTATTCTCTATTACATGCCGGCCCGTGAGGATTACTCCTTCAACCACCGCAAAGTTTCCCCTGATCACAGGTCGTCTTCTTCTTCTAAGACCTCTTTTGCTGTAATTTTTGATGCTGGTAGCTCTGGGAGTCGCGTCCATGTTTTTTGCTTCGATCATAATCTCGATCTCCTCCCTGTTGGCAAGGACATCGAACTTTTCGAACAACTTAAACCAGGATTGAGTGCATACGCTGACAATCCCAAGGATGCTGCAGCATCTCTACTTTCCCTATTGGAAAAGGCAGAAAATGTGGTTCCAAAAAGGCTGCGGCAAATGACCCCTGTTAGAGTTGGGGCAACTGCAGGCTTGAGGGCCCTGAAAGGTGATACATCTGATAGAATTTTGCAGGCGGTTAGGGATCTCCTGCGAGACAAAAGTGACCTCAGGTTGGAGGGAAATGCTGTGTCTGTAATTGATGGAACTCAAGAAGGTTCTTACCTTTGGGTGACGTTAAACTATCTGCTTGGGAACTTGGGGAAGAAATATTCGGATACAGTTGGAGTTGTAGATCTTGGGGGAGGATCTGTTCAAATGGCATACGCTATCTCAGAAAAGGATGCTTCTCGGCTATCAAATGCAGAGGGGGTATACATCAAAAAGATGTATCTGAAGGGAGCAACTTATTATCTCTATGTTCACAGTTATTTGCATTATGGGTTACTAGCTGCTCGAGCTGAGGTTTTGAGTGTCTCAGAAGATTCTAGCAATGATTGCATCCTATCTGGCTACGAAGGAGCATACCATTACGGGGGAAAGGACTACAAAGCATCGGCCTCTTCATCAGGCTCCAGCTTGAATGGATGCAGGAGGACAGTTTTGAAGGCCCTCAAGGTTAATGAATCCTCATGTACTCACATGAAGTGCACTTTTGGTGGCGTTTGGAATGGAGGAGGAGGAGACGGGCAGAAGAATCTCTTCGTTGCTTCGTTTTTCTTCGACAGGGCGGCTGAGGCTGGTTTTGCCGACCCCAATAAGCCCGTCGCTAAAGTTCGCCCTTCAGACTTCAACGATGCAGCAAAGCAAGCCTGCCAAATCAAAGTCGAAGACACCAGTACATATCCGAATGTCGAGAAGGATAACCTGCCGTACTTGTGTTTGGATCTTGTGTATCAGTACACACTACTCGTAGACGGATTCGGCTTGGATCCCTGGCAAGAGATCACATTGGTGAAGAAGGTTAAATACCAGAATTCCTTAGTTGAAGCAGCATGGCCTCTAGGCAGCGCCATCGAAGCTGTCTCGTCGTTAGCCTAA 1611 47.05 MNEIVALLTIGELDPTPETPQSLKAPAASNSTGNGQIRYRSPSSAELLDGQSASLPLQDQQKLLQLEFDKMHKRPGKQQSESLSNKIYRFRGVLLLTSLSLFLIFFILYYMPAREDYSFNHRKVSPDHRSSSSSKTSFAVIFDAGSSGSRVHVFCFDHNLDLLPVGKDIELFEQLKPGLSAYADNPKDAAASLLSLLEKAENVVPKRLRQMTPVRVGATAGLRALKGDTSDRILQAVRDLLRDKSDLRLEGNAVSVIDGTQEGSYLWVTLNYLLGNLGKKYSDTVGVVDLGGGSVQMAYAISEKDASRLSNAEGVYIKKMYLKGATYYLYVHSYLHYGLLAARAEVLSVSEDSSNDCILSGYEGAYHYGGKDYKASASSSGSSLNGCRRTVLKALKVNESSCTHMKCTFGGVWNGGGGDGQKNLFVASFFFDRAAEAGFADPNKPVAKVRPSDFNDAAKQACQIKVEDTSTYPNVEKDNLPYLCLDLVYQYTLLVDGFGLDPWQEITLVKKVKYQNSLVEAAWPLGSAIEAVSSLA 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3555555 3561513 + CmaCh03G002500.1 Cma03g00250 289821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00250 536 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 257 272 IPR000407 GO:0016787
Cma03g00250 536 Pfam GDA1/CD39 (nucleoside phosphatase) family 133 534 IPR000407 GO:0016787
Cma03g00250 536 Gene3D Exopolyphosphatase. Domain 2 258 513 - -
Cma03g00250 536 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 72 534 IPR000407 GO:0016787
Cma03g00250 536 MobiDBLite consensus disorder prediction 22 39 - -
Cma03g00250 536 MobiDBLite consensus disorder prediction 13 39 - -
Cma03g00250 536 Gene3D - 138 529 - -
Cma03g00250 536 CDD NBD_sugar-kinase_HSP70_actin 140 320 - -
Cma03g00250 536 PANTHER APYRASE-LIKE PROTEIN 72 534 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00250 Cma-Chr3:3555555 Cma05g00860 Cma-Chr5:5916518 1.19E-42 dispersed
Cma09g01056 Cma-Chr9:5518678 Cma03g00250 Cma-Chr3:3555555 4.26E-166 transposed
Cma03g00250 Cma-Chr3:3555555 Cma07g01174 Cma-Chr7:6438841 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00250 K14641 - csv:101220305 830.476