Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00257 ATGGCAGAATTAGATCAAGAACTTGATCCTCCTCCCTTCTTTCTTTGCCCCATCTCTCTCCAAATCATGAAAGACCCCGTCACGGTCGCTTCCGGCATAACCTACGACCGCGAAAGCATTGAGAGATGGTTGTTTTCAGATAGACACAAGACGTGCCCTGTCACGCAGGTTGTCTTGTCGAGCTTCGACATCACTCCCAACCATACTATAAGACGAGTCATTCAAGCTTGGTGCACTATCAATGCTTGCAAGGGCATTGAGAGGATTCCGACGCCTAAGCCACCGATTGATTGTAAGCAAGTGGTTCGAATTCTTGCAGATGCCAAATTGTCTCCGTTCTCGCAACAGAATTGTCTCCGACGACTCCGATCTATTGCAGCCGCAAGTGAATCTAATAAACGTTGCATGGAAGCAGCTGGAGCTGTGGAGTTCTTGGCCGGAATTGTGTGTAATTCCACCAACGTGGAATTCAGCTTAGAAGATTACGCTTACTTGATTGACGACCAGTTCGCGAATTTGGGCGATGAGGCTTTGAGCATTCTTTACAAACTTCAAATCTCCGAATCCGGCCTGAAATTTCTACTCGCCAACAATGGCGGCATCTTCGTCTCAACCTTAACCAAAATCTTGCAAAACGGAACCTATGGCTCCCGAGCATATTCAGTAATGCTTCTAACTTCGATGTTCGAAGTTGCAGATCAGATTCAGATCCTCAGCCTAAACACCGATTTCTTCATCGAAATCGTCCAAATTCTGAAGGATCAGATCTCGAAACAGGCTTCGAAATCGGCATTGAAACTGCTAATCGGTCTTTGTTCGAGTTCCAGAAACAGAGTTAAGGCGGTCCAAGCAGGTGCGATTCCGGTTCTGATCGATCTCCTCCTCGATCTCGATTCGTCAGAGAAGCGTTCGTGCGAGATGATTCTCGTGACGCTCGATCTACTCTGCCGCTGCGCCGACGGCAGGGCGGAGGTACTGAATCACGCGGCAGGGATCGCTGTTGTATCGAAGAAGATTCTGAGAGTTTCGACTCTCGGAAGCGAGAAGGCCGTCGGAATCTTGTGCTCTATCGCGAGATTCTCGGCGAGCGAAAGCGTCGTCCAGGAAATGATGCGGCTCGGAGTTGTGACGAAGCTCTGTTTTCTGCTTCAAGTCGTCGGCGCCGGAGGCAAAGCGAAGGAGAAAGCGAAAGAGATTCTGAAGCTTCATGGTCGGACATGGCGGAATTCTTCATGTCTGCCTTCGAGTCTGCGATCTTCTTTTCCACATTAG 1272 49.06 MAELDQELDPPPFFLCPISLQIMKDPVTVASGITYDRESIERWLFSDRHKTCPVTQVVLSSFDITPNHTIRRVIQAWCTINACKGIERIPTPKPPIDCKQVVRILADAKLSPFSQQNCLRRLRSIAAASESNKRCMEAAGAVEFLAGIVCNSTNVEFSLEDYAYLIDDQFANLGDEALSILYKLQISESGLKFLLANNGGIFVSTLTKILQNGTYGSRAYSVMLLTSMFEVADQIQILSLNTDFFIEIVQILKDQISKQASKSALKLLIGLCSSSRNRVKAVQAGAIPVLIDLLLDLDSSEKRSCEMILVTLDLLCRCADGRAEVLNHAAGIAVVSKKILRVSTLGSEKAVGILCSIARFSASESVVQEMMRLGVVTKLCFLLQVVGAGGKAKEKAKEILKLHGRTWRNSSCLPSSLRSSFPH 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3616151 3618170 - CmaCh03G002570.1 Cma03g00257 289828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00257 423 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 7 422 - -
Cma03g00257 423 Pfam U-box domain 11 79 IPR003613 GO:0004842|GO:0016567
Cma03g00257 423 Gene3D - 98 404 IPR011989 -
Cma03g00257 423 PANTHER WDSAM1 PROTEIN 7 422 IPR045185 GO:0061630
Cma03g00257 423 SUPERFAMILY ARM repeat 102 384 IPR016024 -
Cma03g00257 423 ProSiteProfiles U-box domain profile. 9 84 IPR003613 GO:0004842|GO:0016567
Cma03g00257 423 CDD RING-Ubox_PUB 14 56 IPR045210 -
Cma03g00257 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Cma03g00257 423 SUPERFAMILY RING/U-box 7 84 - -
Cma03g00257 423 SMART Ubox_2 13 77 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00257 Cma-Chr3:3616151 Cma06g00527 Cma-Chr6:2467864 3.31E-151 dispersed
Cma14g00362 Cma-Chr14:1595290 Cma03g00257 Cma-Chr3:3616151 1.74E-39 dispersed
Cma09g00639 Cma-Chr9:3014929 Cma03g00257 Cma-Chr3:3616151 1.50E-08 transposed
Cma03g00257 Cma-Chr3:3616151 Cma07g01176 Cma-Chr7:6454855 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00257 - - cmo:103485961 651.744