Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00259 ATGGCTGCCTACGCTTTGCTCGGCGATTCCACCGGACGTGTTAATGGCGGTTTTGATGATAGTCCTTTGACGAGTGCATCGACGAACAGCAACGGCAGTGAAGAACGTAATCATCAACAGACTGTTCAAGTTCAGGTTATTCAATCGCGAAAAATGGTGCGGAAGAGAATCGCGTCGGAGATGGAGATCGACGGCGGTGGAGTCACTGCATCTGTTCATTCTCGGCTTTCGCGGCGGAGTTTAGGTTCTGATCGTCCTTTTGCTTGTGGAGAAATTAAAGGGAATGTGAATTATTGTTCTTCTTCAAACCCTAGCCATGGCGGTAACCACTCCACTGTGCATAATTTAACCGCTCTGACGTCAGGTGTAATCGAAGGGACAAATTTATCAAATCCTCCTTCTGCTTCTGATGCTACGGCCTCTTCCACTACCTCCAACAATAACAATAACAACAACGCGACTCTTCTTGATAGTACTCTTCCTGTTCTTCGTCCGCAGCCCCACCATCACTTGCAGAATCCTGCAGTCTGTGGTTTCTCTGGTTTGCCGTTGTTCCCACCGGAATCGAATCACCACCACAAGTTAAATACTCGGAGTAATCCTTTCCCCCTTCCTAATCCATCTCAGATTCTTCTTCATAATCCTCCCACTACTGCAACAACCTCCATTATCGCCGCCGCTTCTTCTCCCATGGATGATTCCTCCGCCACCGCTTGGATCGACGGCATCATTAAGGATTTAATCCACAGCTCCACCGCCATATCCATTCCTCAACTTATTCAGAACGTACGTGAGATTATCTACCCCTGTAACCCCAATCTTGCGAACCTTCTTGAGTTTCGTCTTCGTACTTTGACGGAACCTAGTGTTCCTAACTTCGTTGCTGAGGATCATCGACTGAGGAAATCCACTTTGCCCGTGGCCGCGCTGGGGTTGCAGCAGAGGCAGTTCAATCAAGAACAGCATGAGCAAGAGCATGATTGTTCTGGTTTGAAGCTTAATCTTGATTCTTCTTCTCTGCATAATTTTCCTACTTTCCCCTCTCAGCCACCGTTTCATGAGCCGTATCTTCACTGGGGAGCAACCACTCCGCCAGTCCCCACCCCCTCCGGCGACGATGTCTTACAGCGGCTCCCCGGTCATCATCAACTTAATCTCTCTTCTGTTACACCGTCGTCGCTTGTTTCTCTAAACCATGTCCCTTCAAAGCCACAATCAGAACATCAGAACTCCTGTCCGGTGAATGTAAAGGCGGCGGTGGCACAGCCGGCGCCAGCGGCAGCGGCTGCGGCAGCGCCACAGCCGAGTAATAACCCTTCAGCCACTGCTTTGCTAATTAGAGAGATAAAAGAGGAGATGAGGCAACAGAAGAGAGACGAAGAAGGGTTACACCTCTTGACATTACTTCTTCAATGTGCCGAAGCCGTTTCTGCTGATAATTTAGAAGAAGCCAACAAGATGCTCTTGGAAATCTCCGAGTTGTCCACACCCTTCGGCACATCGGCACAGAGGGTAGCGGCGTATTTCTCAGAAGCAATGTCGGCGAGGCTTGTAAGCTCTTGTTTAGGCATATATGCAGCTCTGCCGCCATCGTTGATGCCCCATACGCACAGCCAGAAAATAGCCTCAGCCTTCCAGGTCTTCAATGGCATAAGCCCATTTGTCAAATTCTCACACTTCACTGCCAATCAAGCCATACAAGAAGCTTTTGAAAGGGAAGAGAGAGTTCACATCATAGATCTAGACATCATGCAAGGCCTTCAATGGCCTGGCCTCTTCCACATCTTGGCGTCTAGGCCTGGCGGGCCGCCGTATGTCCGCCTTACAGGGCTGGGGACCTCTCAGCAAGTTCTTGAGGCCACTGGCAAGCGCCTCACTGAATTCGCCGAGAAGCTAGGCCTTCCCTTCGATTTCTTCCCTGTGGCTGATAAAATTGGCAATTTAGACTTCGAGAGGCTCAACGTGAGCAAAAGGGAAGCCGTTGCCGTTCATTGGATGCAGCACTCTCTTTATGAAGTCACTGGTTCTGATTCCAATACGCTATGGCTTTTGCAGAGATTGGCCCCAAAAGTGGTGACGGTGGTGGAACAAGATCTAAGCCACACAGGCTCGTTCTTGGGGAGATTCGTAGAGGCCATTCACTACTATTCCGCACTGTTTGACTCATTGGGTGTCAGCTATGGCGAAGAGAGTGAAGAGAGACACTTAGTGGAGCAGCAACTTTTGTCAAGGGAGATCAGAAACGTGCTGGCCGTGGGTGGGCCGTCGAGGACCGGCGAAGTAAAGTTCCAAAACTGGAGAGAAAAGCTACAGCAATCTGGGTTTAAGGGCATTTCTCTCGCCGGAAATGCTGCAACTCAGGCCACTCTCCTCCTCGGAATGTTCCCTTCCGATGGGTATACGCTTGTTGAAGATCATGGGACTCTGAAACTTGGATGGAAGGATCTTTGTTTGCTCACTGCCTCAGCTTGGAAGCCGCCGTTTCATCATCATGCCGCCGCCGCCGCTGCTGCTGCTGCACCGGCCACCAACAACAACCACATTCCACGAACTTGA 2556 50.27 MAAYALLGDSTGRVNGGFDDSPLTSASTNSNGSEERNHQQTVQVQVIQSRKMVRKRIASEMEIDGGGVTASVHSRLSRRSLGSDRPFACGEIKGNVNYCSSSNPSHGGNHSTVHNLTALTSGVIEGTNLSNPPSASDATASSTTSNNNNNNNATLLDSTLPVLRPQPHHHLQNPAVCGFSGLPLFPPESNHHHKLNTRSNPFPLPNPSQILLHNPPTTATTSIIAAASSPMDDSSATAWIDGIIKDLIHSSTAISIPQLIQNVREIIYPCNPNLANLLEFRLRTLTEPSVPNFVAEDHRLRKSTLPVAALGLQQRQFNQEQHEQEHDCSGLKLNLDSSSLHNFPTFPSQPPFHEPYLHWGATTPPVPTPSGDDVLQRLPGHHQLNLSSVTPSSLVSLNHVPSKPQSEHQNSCPVNVKAAVAQPAPAAAAAAAPQPSNNPSATALLIREIKEEMRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPPSLMPHTHSQKIASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSQQVLEATGKRLTEFAEKLGLPFDFFPVADKIGNLDFERLNVSKREAVAVHWMQHSLYEVTGSDSNTLWLLQRLAPKVVTVVEQDLSHTGSFLGRFVEAIHYYSALFDSLGVSYGEESEERHLVEQQLLSREIRNVLAVGGPSRTGEVKFQNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDHGTLKLGWKDLCLLTASAWKPPFHHHAAAAAAAAAPATNNNHIPRT 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3640570 3644904 - CmaCh03G002590.1 Cma03g00259 289830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00259 851 MobiDBLite consensus disorder prediction 17 40 - -
Cma03g00259 851 PANTHER PROTEIN SCARECROW 139 827 - -
Cma03g00259 851 Pfam GRAS domain family 466 825 IPR005202 -
Cma03g00259 851 MobiDBLite consensus disorder prediction 354 373 - -
Cma03g00259 851 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 139 827 IPR005202 -
Cma03g00259 851 MobiDBLite consensus disorder prediction 124 155 - -
Cma03g00259 851 MobiDBLite consensus disorder prediction 15 40 - -
Cma03g00259 851 ProSiteProfiles GRAS family profile. 456 825 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00259 Cma07g01178 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00259 Cma-Chr3:3640570 Cma04g00614 Cma-Chr4:3147711 9.88E-161 dispersed
Cma03g00259 Cma-Chr3:3640570 Cma07g01178 Cma-Chr7:6470874 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34597 PF03514 GRAS 8.60E-127 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00259 - - bhj:120074183 1385.55