Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00280 ATGAGGAGGGATCGTGTGTGCGTTTTTCTGCTCTTGTGTTTCTGCTCCATGCTACTTTCTGGTGCTGCAATCACAGAGCCATCTGATGTTGAAGCATTGCTAACAGTAAAGAGGAGTCTGATTGATCCTATGGACAATCTTAAAAATTGGAATAATGGAGATCCTTGCACAACTAATTGGACTGGAGTAGTATGTAGCATTTTCAATGGAGCTGTCGGGAACTTACGTGTCAAAGAACTCCAGCTACTGAATATGAACCTATCTGGAAACTTAGCCCCTGAGATCAGCCAATTGTCTCAGCTTGAGAATTTAAATTTCATGTGGAATAACCTAACTGGTTTAATTCCGAAGGAGATTGGCAGTATGAGGCCGCTGAAACTTTTGCTCTTAAATGGAAATAAATTCTCCGGTTCTCTTCCGGATGAGCTTGGTAATCTTACAAATCTCAAACGATTTCAAATAGATGAGAATCAAATTTCAGGGCATATCCCAAAATCATATGCCAACTTGACCCATGTGAAGCACCTCCATTTCAATAACAACACTTTAAGTGGTGAAATTCCATCTGAGCTTTCCAGATTACACAATCTTCTTCACTTGCTTTTGGATAACAATAACCTATCGGGTTCTCTGCCACCAGAATTTTCGTCCTTGCCAAAGCTAAGCATTCTGCAACTTGATAACAACAACTTAGAAGGTGAAATTCCAGTTTCTTATGAAGAATTTTCTACATTAGTGAAATTAAGTCTGAGGAATTGCAGCTTGGAGGGGCCGATTCCTAATTTCAGCAAAATTGCAAACCTCAGTTACTTGGATCTTAGCTGGAACCATTTTACTGGACCCATACCACCATATAACCTCTCTTCTAACATGACAACAATAATTTTGTCACACAACCAGCTGAATGGATCTATACCCAGAAGTTTCTCCAATCTTCATAATCTCCAGAAACTGTTACTTGAGAGTAACTTTTTGAATGGTTCGGTACCTGCATTATGGGAGAAAATGTCCTTCAATTCAAGTGCTCGACTTACACTTGATCTTCGGAACAATTCGTTTTCTGACATTTCTGGAAGCACAAACCCTCCAGCTAATGTCACCCTAAGGCTTGGAGGAAATCCATTCTGCCAAAATTTGAACCGACAAAACTCTGACCTGTTCTGTACGTCTAAAATTGTAGAGGACCAGCTGCATAGAAGCTCGAGGAACTCCAATGAAACATGTCGAAGTTGTCCAACAGATAGTTTCTTTGAATACGTTCCAGACACTCCTGACCCGTGCTTTTGTGCATCACCTCTTGGTATTGGATATAGGCTGAAGAGTCCAAGTTTTTCCTACTTTCCTCCTTACATATATTCATTTCAAGCGTATCTGACAAAGGAACTCAGTTTGGATAAGCAGCAATTGTTAATCGATTCATACGTTTGGGAAGGATCTCGACTGAGGATGTATCTAAAGATATTCCCATTATTTGATAGTGGTACTCATGTGTTGGATCAAAGTAAGGTATTTCAAATTACAGAAAAGTTTATGTCATGGAATTTCACTCGTGATGACTTTTTTGGCCCATATGAGCTTCTCAACTTCACACTCCCTGGCCATCATCAGACTGTCATTTTCCAGACAGTGAAAACGGGCATTGGTGCGGGCATCCTGGCTGCCATTGTAGTTGGATCTATTACCTGCATTCTTATGACAGTAGCGGTAGCCATACTCCTATTCACTAGGCATTCAAGATACCATCGAAATTTGTCGAGGAAAAAATTCTCTTCAAAGATTGGTCTGAAAATTGATGGTGTAAAAGCATTTTCATTCAAGGAAATGCAATCGGCTACTGGAAATTTCAACCGCTCAACTCAAGTTGGCCAAGGAGGTTATGGCAAGGTCTATAAAGGCATATTGTCAGATAATTCAGTTGTCGCCATCAAGCGTGCAGAAGAAGGATCCTTACAAGGACAAAAAGAATTCTTGACGGAGATAGAACTCTTATCACGATTGCATCACCGAAACTTAGTTTCGCTGATCGGATATTGTGATGAAGCAGGAGAACAAATGCTGGTTTACGAGTTTATGCCAAATGGAACTTTGCGGGACTGGCTTTCTGGCTTTGAATTTTCTGCCAAAAGTAGAACGACCGTAAATCTGAATTTTCGTATGAGATTACAAATTGCACTGGGTTCAGCTAAAGGTATACTGTATCTCCATACTGAAGCAAATCCTCCTATATTTCACCGAGACATCAAAGCTAGAAACATACTCCTCGACGCCAAGCTCACAGCCAAAGTGGCTGATTTCGGATTATCACGTCTTGCTCCCGATCTAGATTTCGAGGGGGATGTTCCTGGACATATATCTACTGTTGTGAAGGGTACCCCAGGTTATCTTGATCCAGAGTACTTTTTAACCCGCAAATTGACGGATAAAAGTGATGTCTATAGCCTAGGAGTTGTGTTATTGGAGCTCTTGACGGGAATGCACCCTATATCATACGGCAAAAACATTGTTCGTGAGGTCAAATTGGCACATCAAATGGGAACGATTCTTTCAATTGTAGACACCAAGTTGGGTTCTTTCGCATCTGAGTGTTTAGAAAGGTTTGTTGCTTTGGCCCTCAGTTGTTGCCATGACAAGCCAGAAGAGCGGCCGTCCATGCTGGTTGTAGTGAGGGAGCTGGAGAACATACTGTACATGATGCCTGATGACAGTGGCGCCTTGTATTCAGACCCGTCCCTGAGATCAAGTGCCGGTCTTCCCTCACCAGTTTCAATGTCATCCTGCATCACCCGAGACCGGTTTGCATCGGGAAGCATTTCGGGGAGTGATCTCATCAGTGGCGTCGTCCCAACCATCGCCCCTCGCTGA 2862 42.1 MRRDRVCVFLLLCFCSMLLSGAAITEPSDVEALLTVKRSLIDPMDNLKNWNNGDPCTTNWTGVVCSIFNGAVGNLRVKELQLLNMNLSGNLAPEISQLSQLENLNFMWNNLTGLIPKEIGSMRPLKLLLLNGNKFSGSLPDELGNLTNLKRFQIDENQISGHIPKSYANLTHVKHLHFNNNTLSGEIPSELSRLHNLLHLLLDNNNLSGSLPPEFSSLPKLSILQLDNNNLEGEIPVSYEEFSTLVKLSLRNCSLEGPIPNFSKIANLSYLDLSWNHFTGPIPPYNLSSNMTTIILSHNQLNGSIPRSFSNLHNLQKLLLESNFLNGSVPALWEKMSFNSSARLTLDLRNNSFSDISGSTNPPANVTLRLGGNPFCQNLNRQNSDLFCTSKIVEDQLHRSSRNSNETCRSCPTDSFFEYVPDTPDPCFCASPLGIGYRLKSPSFSYFPPYIYSFQAYLTKELSLDKQQLLIDSYVWEGSRLRMYLKIFPLFDSGTHVLDQSKVFQITEKFMSWNFTRDDFFGPYELLNFTLPGHHQTVIFQTVKTGIGAGILAAIVVGSITCILMTVAVAILLFTRHSRYHRNLSRKKFSSKIGLKIDGVKAFSFKEMQSATGNFNRSTQVGQGGYGKVYKGILSDNSVVAIKRAEEGSLQGQKEFLTEIELLSRLHHRNLVSLIGYCDEAGEQMLVYEFMPNGTLRDWLSGFEFSAKSRTTVNLNFRMRLQIALGSAKGILYLHTEANPPIFHRDIKARNILLDAKLTAKVADFGLSRLAPDLDFEGDVPGHISTVVKGTPGYLDPEYFLTRKLTDKSDVYSLGVVLLELLTGMHPISYGKNIVREVKLAHQMGTILSIVDTKLGSFASECLERFVALALSCCHDKPEERPSMLVVVRELENILYMMPDDSGALYSDPSLRSSAGLPSPVSMSSCITRDRFASGSISGSDLISGVVPTIAPR 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3750096 3761792 - CmaCh03G002800.1 Cma03g00280 289851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00280 953 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 6 917 - -
Cma03g00280 953 Pfam Protein kinase domain 616 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00280 953 SMART serkin_6 615 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00280 953 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cma03g00280 953 ProSiteProfiles Protein kinase domain profile. 615 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00280 953 Gene3D Transferase(Phosphotransferase) domain 1 691 902 - -
Cma03g00280 953 SUPERFAMILY L domain-like 25 333 - -
Cma03g00280 953 SUPERFAMILY Protein kinase-like (PK-like) 600 922 IPR011009 -
Cma03g00280 953 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 6 917 - -
Cma03g00280 953 CDD STKc_IRAK 621 894 - -
Cma03g00280 953 ProSitePatterns Protein kinases ATP-binding region signature. 621 643 IPR017441 GO:0005524
Cma03g00280 953 Gene3D Ribonuclease Inhibitor 288 408 IPR032675 -
Cma03g00280 953 Gene3D Ribonuclease Inhibitor 25 287 IPR032675 -
Cma03g00280 953 Gene3D Phosphorylase Kinase; domain 1 586 690 - -
Cma03g00280 953 ProSitePatterns Serine/Threonine protein kinases active-site signature. 742 754 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00280 Cma07g01205 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00737 Cma-Chr1:3882381 Cma03g00280 Cma-Chr3:3750096 0 dispersed
Cma03g00280 Cma-Chr3:3750096 Cma13g00009 Cma-Chr13:181558 0 dispersed
Cma14g00001 Cma-Chr14:353 Cma03g00280 Cma-Chr3:3750096 8.76E-163 wgd
Cma03g00280 Cma-Chr3:3750096 Cma06g00176 Cma-Chr6:881424 9.79E-152 wgd
Cma03g00280 Cma-Chr3:3750096 Cma07g01205 Cma-Chr7:6618361 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68396 PF00069 Pkinase 3.90E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00280 - - bhj:120073192 1574.3