Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00285 ATGAGGCTACATTCCCTTTTTGCAGCATTTTTACTCTTACTTTCCTTCATCGAGGCTGATCTAAACTCAGACAAGCAAGCTCTTCTCGAGTTTATTTCGACGGTTCCCCACGGTCGAAAAATCAACTGGGATCCCTCTACCCCGGTCTGCACGGCTTGGGTTGGCATCACGTGCACTTCCAACCTCTCTAATGTGCTTGCTCTCAGGCTGCCTGCTGTTGGACTGTTTGGTCCGATACCCGCCAATACACTTGGAAAGTTAGACGCTCTTAGAACCTTGAGTCTTCGATCTAACAATCTTAATGGGAACGTTCCATCGGATGTGCTATCCCTTCCCTCCCTAAAGTTTATATATCTTCAACATAATAACTTTTCTGGTCAAATATCTTCTTCCCTGTCTCCTAGCCTTACCTTCCTCGATCTGTCGTTCAACTTTCTCACGGGAAACATTCCGACATCGATACAAAATCTCACGCAGCTCACTAGCCTCAATGTTCAAAACAACTCCCTGAACGGATCCATTCCTGATATCGGTCACCTAAAGCTTAAACTATTGAATGTGAGCTACAACCATCTTAGCGGTCGTATTCCCGCTTCACTGCAATCATTTCCTCCTTCTTCCTTTGAAGGGAACTCACTGCTATGTGGCTCACCTCTGAAAAATTGCTCACTTGGTGCTCCCTTACCTTCTCCATCTCCCACTTCTTCGACCCGGCCGAAGAACGAAAAGAGGATAAACATTGGAGCCATCGTTGCCATTGCCTTGGGTGGTTCTGCATTGCTCTTCCTCGTCACGATATTGATTGTCGTCTGTTGTATAAAGAAAAAAGATGGCGAAGGTAGTACCGTTGCTGCGAAAGGAAAGGGCAAAAGGAGTGAGCAACCAAAGGAGGATTTCGGAAGCGGGGTGCAAGAGCCCGAGAAAAATAGGCTCGTGTTCTTTGAAGGATGTTCGTATAATTTTGATCTCGAGGACTTGTTAAGGGCCTCCGCCGAAGTACTCGGAAAAGGGAGTTACGGGACTACTTACAAGGCGATCTTGGAGGATGGAATTACAGTGGTAGTAAAGAGGTTGAAGGAAGTGGTAGCTGGGAAGAAGGATTTTGATCAACAAATGGAGATTGTTGGGAGAATCGGCCAGCATCCGAACGTCGTGCCTCTCCGTGCCTATTACTATTCGAAAGACGAGAAGCTTTTAGTTTACGATCACGCCATTGCTGGAAGCTTTTCCTCATTACTCCATGGAAGCCGAGATGGTGGAAGAGGGCCACCGGACTGGGAAACACGAGTGAAGGTTTCACTTGGGTGTGCCAAAGGCCTTGCACATATCCATTCATCAAGTGGGGGAAAATTGATCCATGGCAACATAAAGTCCTCTAACATCCTTCTTACACAAGACATGAATGGTTGTATTTCAGATTTTGGCTTGACTCCTTTGATGAACTCTCCAATCATTCCCTCTAGAAGCGTAAGTTATCGTGCTCCAGAGGTGATCGAGACTCGAAAGTCAACTCAAAAGTCAGACATTTACAGTTTCGGAGTCGTTTTGCTCGAGATGTTGACTGGGAAAGCGCCATCCCAATCGCCAGGCCGTGATGATGTCATGGACCTTCCTAGATGGGTCCAATCTGTGGTTAGAGAAGAATGGACCTCTGAGGTATTTGATGTAGAACTAATGAAGTATCAAAACATTGAAGAAGAGCTGGTTCAAATGCTCCAAATAGCAATGGCGTGTGTGTCACGAGTGCCAGATATGAGACCAACGATGGAGGAAGTTGTTAGGATGATCGAGGAAATCCGACCATCTGACTCGGGAACTCGACCATCATCAGAAGATAACAAAGACGGGGACGGAGACGGAGACGGAGACGATTACTTGAATACTCCGACCTGA 1893 46.49 MRLHSLFAAFLLLLSFIEADLNSDKQALLEFISTVPHGRKINWDPSTPVCTAWVGITCTSNLSNVLALRLPAVGLFGPIPANTLGKLDALRTLSLRSNNLNGNVPSDVLSLPSLKFIYLQHNNFSGQISSSLSPSLTFLDLSFNFLTGNIPTSIQNLTQLTSLNVQNNSLNGSIPDIGHLKLKLLNVSYNHLSGRIPASLQSFPPSSFEGNSLLCGSPLKNCSLGAPLPSPSPTSSTRPKNEKRINIGAIVAIALGGSALLFLVTILIVVCCIKKKDGEGSTVAAKGKGKRSEQPKEDFGSGVQEPEKNRLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTTYKAILEDGITVVVKRLKEVVAGKKDFDQQMEIVGRIGQHPNVVPLRAYYYSKDEKLLVYDHAIAGSFSSLLHGSRDGGRGPPDWETRVKVSLGCAKGLAHIHSSSGGKLIHGNIKSSNILLTQDMNGCISDFGLTPLMNSPIIPSRSVSYRAPEVIETRKSTQKSDIYSFGVVLLEMLTGKAPSQSPGRDDVMDLPRWVQSVVREEWTSEVFDVELMKYQNIEEELVQMLQIAMACVSRVPDMRPTMEEVVRMIEEIRPSDSGTRPSSEDNKDGDGDGDGDDYLNTPT 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3793710 3796053 + CmaCh03G002850.1 Cma03g00285 289856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00285 630 Pfam Leucine Rich Repeat 135 157 IPR001611 GO:0005515
Cma03g00285 630 Pfam Leucine Rich Repeat 181 203 IPR001611 GO:0005515
Cma03g00285 630 SUPERFAMILY Protein kinase-like (PK-like) 332 597 IPR011009 -
Cma03g00285 630 MobiDBLite consensus disorder prediction 280 303 - -
Cma03g00285 630 ProSiteProfiles Protein kinase domain profile. 328 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00285 630 SUPERFAMILY L domain-like 34 220 - -
Cma03g00285 630 CDD STKc_IRAK 334 599 - -
Cma03g00285 630 Gene3D Ribonuclease Inhibitor 180 223 IPR032675 -
Cma03g00285 630 Gene3D Ribonuclease Inhibitor 21 179 IPR032675 -
Cma03g00285 630 Pfam Leucine rich repeat N-terminal domain 22 58 IPR013210 -
Cma03g00285 630 PANTHER OS05G0588300 PROTEIN 7 615 - -
Cma03g00285 630 Pfam Protein kinase domain 331 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00285 630 Gene3D Transferase(Phosphotransferase) domain 1 406 619 - -
Cma03g00285 630 ProSitePatterns Protein kinases ATP-binding region signature. 334 365 IPR017441 GO:0005524
Cma03g00285 630 Gene3D Phosphorylase Kinase; domain 1 292 403 - -
Cma03g00285 630 PANTHER OS05G0480400 PROTEIN 7 615 - -
Cma03g00285 630 MobiDBLite consensus disorder prediction 597 630 - -
Cma03g00285 630 MobiDBLite consensus disorder prediction 597 615 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00285 Cma07g01209 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00285 Cma-Chr3:3793710 Cma20g00302 Cma-Chr20:1479484 0 dispersed
Cma03g00285 Cma-Chr3:3793710 Cma07g01209 Cma-Chr7:6647454 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68397 PF00069 Pkinase 8.60E-36 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00285 - - csv:101210437 1061.21