Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00288 ATGAAGGAAATTCATAAGTTCCGTCTTGCATTTGCATTTGCATCGATCTCTGTTTTCGTTTGCTTGTTCTTCGATGTTCATGTGGTTTTAGCAGACAATTACGTTCCCCGGGATTTCATTCTCCTCGATTGTGGAGGGCCTTCGACTGCCAACGACGTCGATAACCGGAAATGGATGACCGATGACAAATCCAAGTTTATTCCGGCGAGGGGGAATAGCACCGTATCGAAAGCCGCTACACAGGATCCTTCAGTTCCTGATATCCCTTTCATGACGGCTAGGGTTTTCAGCTCTAATTTCACCTACAGCTTTCCTGTGGCCCCTAGTCGTTTATTCGTTCGTCTCTACTTTTACCCTTCTTCTTACAGTGGCCTTAATGCATCTGATGCTCTTTTCTCTGTCTCCACTCAATCCTATACCCTTCTTAAGAACTTCAGCGCTGCACAAACTGCCGAGGCTTTGAATTTTGCTTATATCATTAAGGAATACTCAATCTATGTTGAAGATGGATGGTTGAACTTGACTTTCGTTCCATCCTCCAGTCATCCAAAGGCCTATGCATTTGTGAATGGGATTGAGATTGTATCCATGGCTGATATTTACAGCGATACTTCTGGGACTCTTCTGGTTGTTGGCCCATCTACTCCATTCACTGTGGATAACACCACTGCGCTTGAGAATGTCTATCGGTTGAATGTCGGGGGCAATGATATTATGCCTTCCGGTGATACGGGAATGTATAGGTCTTGGTTTGATGACACACCATATTTGTATGGTGCAGCACAGGGAGTGACAATGACTACTGATCAGAACACGACGATTAATTATCCGCCGAGTATTCCTACTTATGTTGCGCCGGTTGATGTCTACTCCACTGCTAGAGCAATGGGACCTGATAACAATGTCAATTTGAATTATAACATGACATGGATATTGCCTGTTGACTCTGGGTTCTTTTACCTTGTTAGGCTCCATTTTTGTGAGGTTGCTGCAAATATCACAAAAGTCAACCAAAGAGTCTTTGACATTTACATCTTTAATCAAACTGCTATGGATGGTGCCGACGTGGTTGCCTGGGCTGGAAGTAATTATATTCCTGTGTACAAAGATTATGTGGTTTTCATTCCTAGTGGTGGAAGTCCACAGAAGGATTTATGGCTCGAACTGCATCCAGACAAGTCTATGGTCCCCAATTACTACGATTCAATCTTGAACGGAGCGGAGATTTTCAAAATCAGTGACTCGAATGCTAATCTTGCAGGACCAAATCCTATTCCTGCGCCAAAACAGGAAATTATTGATCCATCATTAGCTAACCCAGCATCTTCTCATGGTAAATCGAAGAATAAGGCAGGGATCATTGCTGGAGTTGTTTGTGGAGTAGCTGCTTTAGCTCTGATCATTGGTTTCTTTGTTATTGCTAAACGTCGCCGTGGGCATGGGAAAGATTCTAGCTCGGTTGAAGGACCGTCAGGATGGCTCCCTCTTTCTCTCTATGGAAATTCCCATTCAGCTGGATCTGCTAAGACAAATACAACTGGAAGCTATACCTCCTCCCTGCCTTCCAACCTTTGCCGCCACTTCTCATTTTCTGAGATCAAGGCTGCCACAAGGGACTTTGATGAATCTTTACTACTTGGAGTGGGTGGTTTTGGAAAAGTTTATAAGGGAGTCATTGATGGTGGGACTACGGAAGTTGCCATTAAGCGTGGGAACCCTCTCTCTGAGCAAGGTGTGCATGAATTTCAGACCGAGATTGAAATGCTCTCTAAGCTTCGCCATCGCCACCTTGTGTCGTTGATTGGCTACTGCGAAGAGAATTGTGAAATGATCCTGGTTTATGATTGCATGGCTCATGGAACACTGCGAGAACATTTATACAAGACTCACAAGCCACCATTGTCTTGGAGGCAAAGGCTCGAAATATGCATTGGAGCTGCCCGTGGTCTGCATTATCTCCACACTGGTGCCAAGTATACAATTATTCACCGAGATGTGAAGACAACCAACATCCTTTTGGATGAAAAGTGGGTGGCAAAAGTATCTGATTTCGGGTTGTCGAAAACGGGTCCTACATTGGATCACACCCATGTTAGCACTGTAGTGAAAGGTAGTTTCGGATACTTGGATCCTGAATACTTTAGGCGACAGCAATTGACTGACAAATCAGATGTTTACTCCTTCGGAGTCGTTCTCTTTGAGGTCCTATGCGCTCGGCCAGCCTTGAACCCAACACTCCCCAAGGAGCAAGTGAGTTTAGCTGAATGGGCTGCACACTGCTACATCAAGGGCATTTTAGATCAGATAATTGACCCATTCCTTAAGGGGAAGATTGCATCGGAGTGTCTCAAGAAATTTGCAGAGACAGCAATGAAATGTGTGTCTGATCAGGGCATTGACAGGCCATCGATGGGCGACGTTCTCTGGAATCTAGAGTTCGCGTTGCAGCTGCAGGAGAGTGCCGAAGAGAGTGGCAAGGTAGGCAGCGGGATGGACATAGAAGAAGGTCAGCTCGATGTAGTTTACAAAGGAAAGAAGGATCTAGATGCTTCCCCAGGCATTGATGGAAACATAACCGACTCGAGAAGCACTGGAATCAGTATGAGCATCGGAAGCCGAAGCCTTGCCAGTGAAGATTCGGACGGCTTGACGCCGAGTGCTGTATTCTCACAGATCATGAATCCAAAAGGTCGTTAA 2697 45.27 MKEIHKFRLAFAFASISVFVCLFFDVHVVLADNYVPRDFILLDCGGPSTANDVDNRKWMTDDKSKFIPARGNSTVSKAATQDPSVPDIPFMTARVFSSNFTYSFPVAPSRLFVRLYFYPSSYSGLNASDALFSVSTQSYTLLKNFSAAQTAEALNFAYIIKEYSIYVEDGWLNLTFVPSSSHPKAYAFVNGIEIVSMADIYSDTSGTLLVVGPSTPFTVDNTTALENVYRLNVGGNDIMPSGDTGMYRSWFDDTPYLYGAAQGVTMTTDQNTTINYPPSIPTYVAPVDVYSTARAMGPDNNVNLNYNMTWILPVDSGFFYLVRLHFCEVAANITKVNQRVFDIYIFNQTAMDGADVVAWAGSNYIPVYKDYVVFIPSGGSPQKDLWLELHPDKSMVPNYYDSILNGAEIFKISDSNANLAGPNPIPAPKQEIIDPSLANPASSHGKSKNKAGIIAGVVCGVAALALIIGFFVIAKRRRGHGKDSSSVEGPSGWLPLSLYGNSHSAGSAKTNTTGSYTSSLPSNLCRHFSFSEIKAATRDFDESLLLGVGGFGKVYKGVIDGGTTEVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDCMAHGTLREHLYKTHKPPLSWRQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDHTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPALNPTLPKEQVSLAEWAAHCYIKGILDQIIDPFLKGKIASECLKKFAETAMKCVSDQGIDRPSMGDVLWNLEFALQLQESAEESGKVGSGMDIEEGQLDVVYKGKKDLDASPGIDGNITDSRSTGISMSIGSRSLASEDSDGLTPSAVFSQIMNPKGR 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3805129 3807825 - CmaCh03G002880.1 Cma03g00288 289859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00288 898 Pfam Malectin-like domain 42 412 IPR024788 -
Cma03g00288 898 Gene3D - 224 411 - -
Cma03g00288 898 Gene3D - 39 198 - -
Cma03g00288 898 SUPERFAMILY Protein kinase-like (PK-like) 513 813 IPR011009 -
Cma03g00288 898 Gene3D Phosphorylase Kinase; domain 1 525 615 - -
Cma03g00288 898 Gene3D Transferase(Phosphotransferase) domain 1 617 832 - -
Cma03g00288 898 SMART serkin_6 540 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00288 898 ProSitePatterns Protein kinases ATP-binding region signature. 546 569 IPR017441 GO:0005524
Cma03g00288 898 CDD STKc_IRAK 546 812 - -
Cma03g00288 898 PANTHER - 24 864 - -
Cma03g00288 898 Pfam Protein tyrosine and serine/threonine kinase 546 807 IPR001245 GO:0004672|GO:0006468
Cma03g00288 898 MobiDBLite consensus disorder prediction 853 898 - -
Cma03g00288 898 MobiDBLite consensus disorder prediction 856 891 - -
Cma03g00288 898 ProSiteProfiles Protein kinase domain profile. 540 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00288 898 PANTHER OS07G0166700 PROTEIN 24 864 IPR045272 GO:0004714|GO:0006468
Cma03g00288 898 ProSitePatterns Serine/Threonine protein kinases active-site signature. 661 673 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00288 Cma-Chr3:3805129 Cma14g01162 Cma-Chr14:9201561 0 dispersed
Cma15g00227 Cma-Chr15:1125288 Cma03g00288 Cma-Chr3:3805129 0 dispersed
Cma12g01130 Cma-Chr12:8913915 Cma03g00288 Cma-Chr3:3805129 0 transposed
Cma03g00288 Cma-Chr3:3805129 Cma07g01217 Cma-Chr7:6686722 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68398 PF12819 Malectin_like 1.00E-40 CL0202 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00288 - - csv:101211171 1629.77