Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00297 ATGGCACAGCCTTCTGGGTATGCTGAAACAGACCCATCTGGTCGCTATGGACGGTTTAGAGAGATTCTAGGAAAAGGAGCCATGAAGACAGTATATAAAGCCTTTGATGAGGTGCTTGGGATTGAAGTGGCATGGAACCAAGTCCAGCTCAAAGATGTGTTCCATTCCCCCGAGGAACTACAACGTCTCTACTCAGAAGTTCATCTCCTCAAGAACCTCAACCACGACTCGATCATCCGATTCTACGCTTCCTGGATCGATACTCATCGTCGAACCTTCAACTTCATCACCGAAATGTTCACCTCCGGCACCCTTAGAGAGTACCGACAAAAACATCGAAACATCAATATCGAAGCGATCAAGAACTGGGCTCGACAAATCCTACACGGCCTAGCTTATCTTCATGGCCATGATCCTCCTGTAATCCATAGAGATCTCAAATGTGATAACATATTCATCAATGGCCATCTTGGGCAAGTTAAGATTGGTGACTTGGGACTTGCAACCATCCTTCATGATTCTCAACACGCTCATAGTGTTATAGGTACACCGGAGTTCATGGCACCGGAGCTGTATGATGAGGATTATAATGAGCTTGTAGATGTTTATTCCTTTGGAATGTGTTTGATTGAGATGCTCACTTTGGAGTATCCTTATAGTGAGTGCTCCAACCCTGCTCAGATATACAAGAAAGTCACTTCGGGAAAGTTGCCAAATGCATTCTATGGGATCAAAGACTTGGAGGCCCAAAATTTTGTAAAGAAATGCTTGGAGAATGTTTCAAAGAGGGTGCCTGCCAAAGAGCTCTTGCTTGACCCATTTCTAGCTTCCAATAACAACAATGGCTCTCATCAAGAACACTTCTTGGGTTCATCACAAACTCCAAAGAATTCAATGTCAAGAAGGACAGACATGGTCATTTCTGGATCAATGAATCCCAACGACGATACTGTTTTTCTAAAAGTGCATATCAAAGGGAAGAACGGTAAAGCTAAGAATGTACACTTTGCATTCGACACGATAAACGATACAACTATTGACGTTGCGACAGAGATGGTTAAAGAGTTGGAAATTGGTGATTGGGATCCGAGTGAGATAGCTATGATGATAAAGAATGAGATATACACATTGATACCCAATTGGGAGGAATACCATCAAGATAGCTTCAACTATGATGAACAAGAAGAAGACGGTGGCAAAGACGATGACGAAAGCTACGTAACCCGACATCCTTTCTACTCGTGCTCCTCCCATGCCTCCTCCTCAAATTCTCTTGAGGGTTTCTACTCTTTCTATGAGAATTCCCATCATCATATTTTGGATGGTGTGAATAGTGATGATGATGATACAAGTTCTTCCTTCAATTACTCTGAAATAAGCTTTTGTTCAAGCAATGAAGATGAGTATGGAAGGGAGCCTCAATGCATATCAACCACCAAGAACCCTACAAGATTTTGCCCTACCATGAAGATAGACGCACACCATTTGAGGTATAAGGACACTAAAGTAATGGTGGATCGAGAAGCGTTTGAGAGAGGATCCCGATCTGATAACTCAACTAGACTTACAAGGGTGAAGTCAATGGTGAACCTTCGTAGCGAGGCATTGCACCGATCGTTAGTAGAGATGTTGTTGAAGAAGCGATTGTTTAATACGGTGGATGCCATGGAGAATATTGGATACCAAAAGCCATAG 1695 42.77 MAQPSGYAETDPSGRYGRFREILGKGAMKTVYKAFDEVLGIEVAWNQVQLKDVFHSPEELQRLYSEVHLLKNLNHDSIIRFYASWIDTHRRTFNFITEMFTSGTLREYRQKHRNINIEAIKNWARQILHGLAYLHGHDPPVIHRDLKCDNIFINGHLGQVKIGDLGLATILHDSQHAHSVIGTPEFMAPELYDEDYNELVDVYSFGMCLIEMLTLEYPYSECSNPAQIYKKVTSGKLPNAFYGIKDLEAQNFVKKCLENVSKRVPAKELLLDPFLASNNNNGSHQEHFLGSSQTPKNSMSRRTDMVISGSMNPNDDTVFLKVHIKGKNGKAKNVHFAFDTINDTTIDVATEMVKELEIGDWDPSEIAMMIKNEIYTLIPNWEEYHQDSFNYDEQEEDGGKDDDESYVTRHPFYSCSSHASSSNSLEGFYSFYENSHHHILDGVNSDDDDTSSSFNYSEISFCSSNEDEYGREPQCISTTKNPTRFCPTMKIDAHHLRYKDTKVMVDREAFERGSRSDNSTRLTRVKSMVNLRSEALHRSLVEMLLKKRLFNTVDAMENIGYQKP 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3865243 3869645 + CmaCh03G002970.1 Cma03g00297 289868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00297 564 ProSiteProfiles Protein kinase domain profile. 17 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00297 564 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK5-RELATED 4 564 - -
Cma03g00297 564 Gene3D Transferase(Phosphotransferase) domain 1 100 282 - -
Cma03g00297 564 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 4 564 - -
Cma03g00297 564 SUPERFAMILY Protein kinase-like (PK-like) 19 276 IPR011009 -
Cma03g00297 564 SMART serkin_6 17 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00297 564 CDD STKc_WNK 15 275 - -
Cma03g00297 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Cma03g00297 564 Pfam Protein kinase domain 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00297 564 Gene3D Phosphorylase Kinase; domain 1 3 98 - -
Cma03g00297 564 Gene3D - 308 384 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00698 Cma-Chr2:4262282 Cma03g00297 Cma-Chr3:3865243 0 dispersed
Cma03g00297 Cma-Chr3:3865243 Cma17g00238 Cma-Chr17:1210638 1.63E-157 dispersed
Cma03g00297 Cma-Chr3:3865243 Cma20g00310 Cma-Chr20:1534263 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68401 PF00069 Pkinase 2.80E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00297 K08867 - csv:101207665 889.797