Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00299 ATGGCGGTTTCTCCCCACTCTTTTCCGCCCAGAAAGCGGCGTCCCTCGGCGGCGGCATTCGTCTCCCCCAAACTCTCCGCCCCAATCCTCCTCGAATCTCTCCTCTCTCTCTGCCATGAAATCTCCGCCATCAAACCGCTTCAATTCATCCTCAAACGCTACTCCATTTCCATGATTCGGAAATCCAGATTACTCCACATTTTTCTCCAAGACCTCCGCCGTAATCCGACGGTTTTGCTTTCTGCCTCCGCCTTGCTCTGCCTTGAAGAAATGTACATCGTTTTGCAAAGAATCAAAACCTTGATTGAAGATTGTTCTAATGGAAGCAAGATGTGGTTACTAACTCAGAACCAATCCATCGCTAACAACTTTCATGAACTCACCTTGGATTTATCGACTCTGCTTGATATCTTCCCTGTCAAGGACGCTGGATTAACCGAAGACGTCGAGGAATTGTTCTTCCTCTTGAGAAATCAGTGCTCCGAATCTGCCGCGTTTCTTGATCCAAGAGATGAAGATCTCCGATTGAGTGTGATGAACACGATCGATCGAATCAAGGATGAAATCGTTCCGGATTGTGCCGAACTGTCGGAGATTTTCTCCATGATCGATATTCGCGATTCGTCGAGTTGTCGTGAGGAAATCGAGAATCTCGAGGACGAAGTTCAGAATCAAACGGATGAGAAATCGAGATCCGATATGATTGCTTTGATCGGATTAGTTCGTTACGCGAAATGCGTTCTGTATGGAGCGTCCACGGCGGAATCTGGATTCCGCCGGAGTGATTCGATCTCGGATTTGCCTGTACCGGCGGATTTCAAGTGTCCGATTAATCTGGATTTAATGCAGGACCCTGTCGTCGTGGCAACAGGTCATACGTACGATCGTGCGGCCATAACGCTGTGGATTGAATCAGGGCACAACACGTGTCCAAAAACAGGTCAGACCTTGGCCCATACGAACCTAATTCCGAACCGGGGATTGAAAAACCTGATTGCGATGTGGTGCCGTCAAGAGAGAGTTCCGTTCGATGTAGCGGAAAGTAACAAAGAGAGAGTCAACGGCGTCACGTTAAACAAGGCGGCGTTAGAGGCTATGAGAATGACGGCGTCATTTCTCGTTAAGAAGCTCGCCACGTCAGCAGACTATTCAGTGAACGACGTCGTTTACGAGCTTCGTGTTTTGGCTAAAACAGATCCCGGAAGCCGTGGGTTCATCGCCCAAGCCGGAGCTGTACCGTTACTCATCCGTTACCTCAACTCTGATAACCCGACTCTGCAAGTTAACGCCGTCACGACGGTGCTAAACCTGTCCATTTTCGAAGCCAATAAATCGTTGATAATGGAGACCGACGGCGCGCTGATCGGAGTCATCGAGGTACTCCGCTCCGGCGCCACTTGGGAAGCGAAAGGGAACGCCGCCGCCACCATATTCAGCCTCTCCAGTATCCATTCTTACCGGCGGAGAATGGGGAGGAAGAGTCGTGTTATCAGGGGACTGCTCGATTTGGCCAAAAACGGGCCGATTAATTCAAAGAGGGATGCTCTGGTGACCATTTTGACACTAGCCAACGACAGGGAGATCGTCGGTCGGTTAATCGAAGGTGGGGTTATGGAGGCGGTGAGCCATCTGATGAAAAGCCTGCCGGAGGAGGCGGTGACGATTCTGGAAGTGGTGGTTAGGAAAGGGGGATTTGTGGCGATTGCTTCTGGTTTTTATGTGATTAAGAAATTAGGCTCTGTGTTGAGAGAGGGCTCCGATAGGGCCAGAGAGAGCGCCGCCGCGGCACTGGTGACAATGTGCAGGCAAGGTGGGTCGGAAATGGTGGCGGAGCTGGCGTCTATTGCTGGGATTGAGAGAGTGATGTGGGAATTGATGGGGAGTGGAACGGCGAGAGGGCGGCGAAAGGCAGCATCGCTATTGAGAATACTCCGGCGATGGTCAGCAGGTTTGGACGGAAACGGCGGCGCTGGAGGAGAGTCCATGACAATGACTTCGTCGAGAATGGGTGGCGACTCAAACCCCATTCTCAGAGAAATTGGAGGCGGGAGAGGAAGATCCTCAACCAACCAAACACCTTTTTATTCGAAGAAAAAGCCCCGGCAGCCACCGCCTCCGCCACCACCGCCAAAACAGAGGCAGTTGCAAGTGCCGTCGCCGCATTCTCACTCTAGAAAATCTTACTATTTCACCAGAGAACTCGAATCCAACGATGGGTTCTGTGTTAATTCCCCTCCGCCGTCCCCGCCGCTGCTGCCTATGCCGGTACCGCCGAGAAAGTCGTCANAACAGGGCAAACCAGGAAAAACACAAACGAGTAACCGGTCGTCGACGGCGACGGCAGTGAAACTCCACAACTCCTCCTCCGTCGGCTGCAGCTGCCGCACGACGGCAGAGTCCATCTGGACCAAATCAGATTCTCCACCGGAATTGTCCACGTCACCCTCCGAAACCTCCCCTGAATCCGACAAAATCCTCGCCGTTGAACCCGAATCCAAATCCTTCGACCGCGATATCGTAATCGACGTGTCATCAAACTACTCCAACAATGTCGTCGTCGGCGCGTTCGACTCCCTGTCGGAAGTGGACCTCCCGCCGATCATAACAAAGCAGAAGAGAAAAGACACAAAACAGAGGAGGACGACGACGACAACAAATACGACAAAGAAACCTCCGGCGAATTCCCCCGGCGTACGGCTCCGAATCCACTCCCCCAAAATCGGGCACCGGAAAATCGGAGGCCGGAAAAGCGTGTCATCCCGGCGGAGCCTTTCCGACAGCTTGGCGATCATGAAATCATCGTACGATCCACAAAAGGACTTCAGAGAATCAATGGTGGAGATGATCGTTGAGAACAACATTAGAGGTTCGAAGGATTTGGAAGATCTTCTTGCATGCTATCTCTGTTTGAACGCCGATGAATATCACGATCTTATAATCAAAGTTTTCAAGCAGATCTGGTTTGATCTTACGGAACTTGCCGTTTGA 2988 51.54 MAVSPHSFPPRKRRPSAAAFVSPKLSAPILLESLLSLCHEISAIKPLQFILKRYSISMIRKSRLLHIFLQDLRRNPTVLLSASALLCLEEMYIVLQRIKTLIEDCSNGSKMWLLTQNQSIANNFHELTLDLSTLLDIFPVKDAGLTEDVEELFFLLRNQCSESAAFLDPRDEDLRLSVMNTIDRIKDEIVPDCAELSEIFSMIDIRDSSSCREEIENLEDEVQNQTDEKSRSDMIALIGLVRYAKCVLYGASTAESGFRRSDSISDLPVPADFKCPINLDLMQDPVVVATGHTYDRAAITLWIESGHNTCPKTGQTLAHTNLIPNRGLKNLIAMWCRQERVPFDVAESNKERVNGVTLNKAALEAMRMTASFLVKKLATSADYSVNDVVYELRVLAKTDPGSRGFIAQAGAVPLLIRYLNSDNPTLQVNAVTTVLNLSIFEANKSLIMETDGALIGVIEVLRSGATWEAKGNAAATIFSLSSIHSYRRRMGRKSRVIRGLLDLAKNGPINSKRDALVTILTLANDREIVGRLIEGGVMEAVSHLMKSLPEEAVTILEVVVRKGGFVAIASGFYVIKKLGSVLREGSDRARESAAAALVTMCRQGGSEMVAELASIAGIERVMWELMGSGTARGRRKAASLLRILRRWSAGLDGNGGAGGESMTMTSSRMGGDSNPILREIGGGRGRSSTNQTPFYSKKKPRQPPPPPPPPKQRQLQVPSPHSHSRKSYYFTRELESNDGFCVNSPPPSPPLLPMPVPPRKSSXQGKPGKTQTSNRSSTATAVKLHNSSSVGCSCRTTAESIWTKSDSPPELSTSPSETSPESDKILAVEPESKSFDRDIVIDVSSNYSNNVVVGAFDSLSEVDLPPIITKQKRKDTKQRRTTTTTNTTKKPPANSPGVRLRIHSPKIGHRKIGGRKSVSSRRSLSDSLAIMKSSYDPQKDFRESMVEMIVENNIRGSKDLEDLLACYLCLNADEYHDLIIKVFKQIWFDLTELAV 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3878905 3886724 - CmaCh03G002990.1 Cma03g00299 289870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00299 995 Pfam U-box domain 269 340 IPR003613 GO:0004842|GO:0016567
Cma03g00299 995 MobiDBLite consensus disorder prediction 801 830 - -
Cma03g00299 995 MobiDBLite consensus disorder prediction 652 784 - -
Cma03g00299 995 MobiDBLite consensus disorder prediction 869 898 - -
Cma03g00299 995 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Cma03g00299 995 ProSiteProfiles OVATE domain profile. 930 989 IPR006458 -
Cma03g00299 995 MobiDBLite consensus disorder prediction 698 715 - -
Cma03g00299 995 Gene3D - 52 140 IPR036537 GO:0007166
Cma03g00299 995 PANTHER U BOX DOMAIN-CONTAINING 11 662 - -
Cma03g00299 995 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 410 452 IPR000225 GO:0005515
Cma03g00299 995 Gene3D - 367 645 IPR011989 -
Cma03g00299 995 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 349 IPR013083 -
Cma03g00299 995 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Cma03g00299 995 MobiDBLite consensus disorder prediction 801 821 - -
Cma03g00299 995 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 11 662 - -
Cma03g00299 995 MobiDBLite consensus disorder prediction 743 757 - -
Cma03g00299 995 Pfam Transcriptional repressor, ovate 934 990 IPR006458 -
Cma03g00299 995 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 929 991 IPR006458 -
Cma03g00299 995 Pfam Armadillo/beta-catenin-like repeat 402 438 IPR000225 GO:0005515
Cma03g00299 995 SUPERFAMILY RING/U-box 259 341 - -
Cma03g00299 995 CDD RING-Ubox_PUB 273 315 IPR045210 -
Cma03g00299 995 MobiDBLite consensus disorder prediction 764 784 - -
Cma03g00299 995 Coils Coil 208 235 - -
Cma03g00299 995 SUPERFAMILY ARM repeat 372 644 IPR016024 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00299 Cma07g01227 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00299 Cma-Chr3:3878905 Cma13g00582 Cma-Chr13:5819182 7.76E-128 dispersed
Cma07g01227 Cma-Chr7:6758599 Cma03g00299 Cma-Chr3:3878905 0 transposed
Cma14g00021 Cma-Chr14:92343 Cma03g00299 Cma-Chr3:3878905 1.22E-45 wgd
Cma03g00299 Cma-Chr3:3878905 Cma07g01226 Cma-Chr7:6751566 1.67E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34599 PF04564 U-box 8.80E-19 CL0229 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00299 - - csv:101205143 1127.08