Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00300 ATGCCACCGTTCGACGACAATCCTCCGCCGCGACTCGCCCGCGGCGACTCTCTGCCGGAAGGAATCCTGTTCGGAAAATACGAACTCGGTAAGCTATTAGGATGTGGAGCTTTTGCGAAGGTCTACCATGGCAGAAACGTTCTTACTGGACAGAGCGTCGCGATTAAGATCGTTAACAAACTCAAAGTCCTCAAAGGCGGTTTCAAGGCGCACGTTAAGAGAGAAATCGCTATCATGCGCCGTCTCCGTCATCCGAACGTCGTTCGTCTGTTTGAAGTTCTGGCGACGAAGACGAAGATTTATTTCGTGATGGAGTTTGCGAAAGGAGGAGAGCTCTTTGGTAAAGTTTCCAAGGGACGGTTCAGTGAGAATCTTAGCCGTCGGTATTTTCAGCAGTTAATCACCGCCGTTGGATATTGTCATTCCCAAGGGATTTTTCATCGTGATTTGAAACCGGAGAATCTTCTTCTCGATGATAATTTCGATCTCAGAGTTTCGGATTTTGGACTTAGTGCTCTCACCGATCAGATTCGTCCCGACGGATTGCTTCATACTCTCTGTGGAACTCCGGCTTACGTCGCGCCGGAGATTCTCGCGAAGAAAGGCTACGACGGAGCCAAAATCGACGTCTGGTCCTGCGGGATTATCCTCTATGTTCTTACCACCGGATACCTTCCGTTCAACGATTCGAATTTAATGGCGATGTATCGGAAGATTTACAGAGGCGATTTCCGGTGCCCTAAATGGACCTCGCCAGATCTGCGGCGGTTTCTCTCGAGGCTTCTGGATACGAATCCGGAGACGAGGATTACCGTCGATGAGATTCATCAAGATCCGTGGTTCGTGAAGGGACTTCAGGAGGAGAAGCTTCAAATCGAAGATTCCGGTTCAGAGATTTACGGCGATGTGAACAATGCGAAATGTTTGAATGCTTTTGATCTGATTTCCTTCTCACCTGGCTTCGATTTGACTGGATTAATCAACGAAACGGAATTTTCCTCTGGCGTTGAGCGGTTTCTCTCCGCCGAATCGCCGGAGAAGATTATAGTGACGGTTGAGGAGGCTTCGAAGTCGGAAAATGCTGCCGTGGAGAAAAACGGCTGGGGAGCTAAAGTGGAGGGTCTCGACGGCGGGTTCATCGTCGTTATTGATATTTTCCAGCTGACGGAGGAATTAGTGGTGGTTGAGATTAAAAACAGAGTAAGGGAAGTAGATCAAGACGGTCAGATTTGGAAAGATATATTGAGACCTCAACTAGAATGTTTGATCTACCGGTCGGAGTGA 1284 48.52 MPPFDDNPPPRLARGDSLPEGILFGKYELGKLLGCGAFAKVYHGRNVLTGQSVAIKIVNKLKVLKGGFKAHVKREIAIMRRLRHPNVVRLFEVLATKTKIYFVMEFAKGGELFGKVSKGRFSENLSRRYFQQLITAVGYCHSQGIFHRDLKPENLLLDDNFDLRVSDFGLSALTDQIRPDGLLHTLCGTPAYVAPEILAKKGYDGAKIDVWSCGIILYVLTTGYLPFNDSNLMAMYRKIYRGDFRCPKWTSPDLRRFLSRLLDTNPETRITVDEIHQDPWFVKGLQEEKLQIEDSGSEIYGDVNNAKCLNAFDLISFSPGFDLTGLINETEFSSGVERFLSAESPEKIIVTVEEASKSENAAVEKNGWGAKVEGLDGGFIVVIDIFQLTEELVVVEIKNRVREVDQDGQIWKDILRPQLECLIYRSE 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3897272 3898555 + CmaCh03G003000.1 Cma03g00300 289871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00300 427 Gene3D Kinase associated domain 1, KA1 310 425 - -
Cma03g00300 427 ProSiteProfiles Protein kinase domain profile. 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00300 427 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 20 425 - -
Cma03g00300 427 ProSiteProfiles NAF domain profile. 304 328 IPR018451 GO:0007165
Cma03g00300 427 CDD CIPK_C 310 419 - -
Cma03g00300 427 SUPERFAMILY Protein kinase-like (PK-like) 23 289 IPR011009 -
Cma03g00300 427 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00300 427 SMART serkin_6 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00300 427 Gene3D Transferase(Phosphotransferase) domain 1 21 309 - -
Cma03g00300 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Cma03g00300 427 PANTHER - 20 425 - -
Cma03g00300 427 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Cma03g00300 427 Pfam NAF domain 307 365 IPR004041 GO:0007165
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00300 Cma07g01228 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00300 Cma-Chr3:3897272 Cma20g00311 Cma-Chr20:1543218 1.67E-178 dispersed
Cma03g00300 Cma-Chr3:3897272 Cma07g01228 Cma-Chr7:6767854 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68402 PF00069 Pkinase 5.80E-71 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00300 - K12761 csv:116403168 789.645