Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00303 ATGAAGGAAATGGCAGAATCTTATACGTTTGTCATGGAGAACAAAGGGGCTATCTTGATGCAACGTTATGAATTAGGAAGGCTTCTGGGGCAGGGAACTTTTGCCAAGGTTTACCATGCTAGGGACATTAAAACTGGTGTGAGTGTGGCTATTAAAGTTATCGACAAGGAGAAGATCTTGAAGGTTGGGATGATCGATCAAATCAAGAGGGAGATCTCTGTCATGAGATTAATTAAGCATCCCAACGTAGTTGAGCTTTATGAGGTTATGGCAACCAAAACTAAAATTTACTTTGTCATGGAATATGTCAAAGGTGGTGAGCTATTCAACAAGGTATCCAAAGGAAAGCTTAAAGAAGCTGTTGCACGGAAATATTTTTGGCAGCTGATCAGTGCTGTCGATTATTGCCACAGTAGAGGAATATGCCATCGAGATTTGAAACCGGAAAACTTACTGTTGGATGAACATGGTAACTTGAAGGTTTCTGATTTTGGGTTGAGTGCTCTTGCCGAATCTAAACGCCAAGATGGATTGCTCCATACTACCTGTGGAACCCCTGCTTATGTTGCTCCAGAAGTCATTAACAGGAGAGGTTATGATGGATGCAAAGCTGATATTTGGTCATGTGGAGTGATTTTATTCGTTCTATTGGCTGGTTATCTCCCATTCCATGATTCTAATCTAATGGAGATGTATAAGAAGATTGGGAAAGGAGAATTTAAATTCCCCAACTGGTTTGCCCCAGAGGTGCGCAAGCTGTTGTCAAAGATTTTGGATCCTAACCCAAATACCAGGATTACTATTGCCAAAATAATGGGGAGTTCTTGGTTAAGGAGGGAGAGTGTGAAACCAAAAATTAATACCGAGGACGTGAAAGAAGTAGCTCCTTTGGACGTTGATGCAATTTTTGTGTCTACGACCGATGACAGGGATTCTGTCAGAGAGCTGAAGCAAGAAGTGGGAAAGCCATTGAATATGAACGCGTTCGACATAATCTCCTTGTCATCAGGTTTCGATTTGTCAGGATTGTTCGAGGATACTAGTCAAAAGAAAGAAGTAAGATTCACATCGAACGAGTCTGCATCCACCATCATCTCTAAACTTCAAGACATTGCAAAGTGCCTGAAACTGAAAATCAAGAAGAAAGACAAAGGCGTACTGAAGATCGAAGGGTGCAAGGAAGGTCGAAAAGGAGCTGTATGTATTGATGCAGAGATTTTCGAGGTCATCCCATCATTCCATATTGTCGAAATGAAGAAGTCAAACGGAGATACTCTTGAATATCACAAGTTAATGAAAAACGATATAAGACCCGCCCTGAAGGACATTGTCTGGACCTGGCAAGGCGAGCAGCAACAGAGACAGCTACCAGAAGCAGAACAACAATGTCGAGAAGAAACGCAACAACAGTCTTCTACCGATCAAGGACTGTTGGAGGCTTCTCCTTAG 1449 41.96 MKEMAESYTFVMENKGAILMQRYELGRLLGQGTFAKVYHARDIKTGVSVAIKVIDKEKILKVGMIDQIKREISVMRLIKHPNVVELYEVMATKTKIYFVMEYVKGGELFNKVSKGKLKEAVARKYFWQLISAVDYCHSRGICHRDLKPENLLLDEHGNLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRRGYDGCKADIWSCGVILFVLLAGYLPFHDSNLMEMYKKIGKGEFKFPNWFAPEVRKLLSKILDPNPNTRITIAKIMGSSWLRRESVKPKINTEDVKEVAPLDVDAIFVSTTDDRDSVRELKQEVGKPLNMNAFDIISLSSGFDLSGLFEDTSQKKEVRFTSNESASTIISKLQDIAKCLKLKIKKKDKGVLKIEGCKEGRKGAVCIDAEIFEVIPSFHIVEMKKSNGDTLEYHKLMKNDIRPALKDIVWTWQGEQQQRQLPEAEQQCREETQQQSSTDQGLLEASP 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3915626 3918561 - CmaCh03G003030.1 Cma03g00303 289874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00303 482 Gene3D Phosphorylase Kinase; domain 1 12 102 - -
Cma03g00303 482 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Cma03g00303 482 Pfam NAF domain 323 381 IPR004041 GO:0007165
Cma03g00303 482 MobiDBLite consensus disorder prediction 455 482 - -
Cma03g00303 482 CDD STKc_SnRK3 22 276 - -
Cma03g00303 482 CDD CIPK_C 327 441 - -
Cma03g00303 482 ProSiteProfiles NAF domain profile. 321 345 IPR018451 GO:0007165
Cma03g00303 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Cma03g00303 482 ProSiteProfiles Protein kinase domain profile. 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00303 482 Pfam Protein kinase domain 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00303 482 SUPERFAMILY Protein kinase-like (PK-like) 19 299 IPR011009 -
Cma03g00303 482 Coils Coil 449 469 - -
Cma03g00303 482 PANTHER - 13 460 - -
Cma03g00303 482 Gene3D Kinase associated domain 1, KA1 321 446 - -
Cma03g00303 482 SMART serkin_6 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00303 482 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 13 460 - -
Cma03g00303 482 Gene3D Transferase(Phosphotransferase) domain 1 103 295 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00303 Cma07g01230 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00706 Cma-Chr2:4277266 Cma03g00303 Cma-Chr3:3915626 0 dispersed
Cma03g00303 Cma-Chr3:3915626 Cma07g01230 Cma-Chr7:6791652 0 dispersed
Cma08g00162 Cma-Chr8:885482 Cma03g00303 Cma-Chr3:3915626 1.24E-47 dispersed
Cma08g01115 Cma-Chr8:6916716 Cma03g00303 Cma-Chr3:3915626 7.07E-131 dispersed
Cma17g00195 Cma-Chr17:1022473 Cma03g00303 Cma-Chr3:3915626 1.53E-129 dispersed
Cma03g00303 Cma-Chr3:3915626 Cma13g00599 Cma-Chr13:5887321 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68403 PF00069 Pkinase 1.00E-76 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00303 K07198 - csv:101209068 786.178