Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00323 ATGTGGCTACTTGTGTTTTTAAAGATCCCGTTCAGGAAAAAGCTTTTATGTACTTACTTTCCAGCTCTAAGGTTTATTATAAAACCCCTCCTCCTTCCCTTTCCTTCTCCTTTGCTTCTCTTCTCTCCTGAAACTCTCAAAATTTTACTTGTAAGATCAGAAAGCTACGAACAAGAACAAGAGGCCACCGAAGTGTTGCAATCAGTGAGGAGTTTGAAGCGCATGACGTCTGAGAATTCTAATGGAGAAAAGACATCAAGAAAGAGGCGAAATGGGTTTGTTTCTGTAGTGGACACTTTGAACAAGTGGAAGAAATTGAATAATCAATTGGAGTTTTTGGCAAAAGATGGAGTAGAGGAAGTTCGTCGAGTTCCAGCCAAGGGCTCCAAGAAGGGTTGCATGAGAGGGAAAGGAGGTCCGCAGAATTCAGACTGTAATTTCAGAGGTGTTAGGCAGAGGACTTGGGGTAAGTGGGTGGCTGAGATTAGAGAGCCTATTGCTAGCGATACCCGTGTGAAGAAGAAAGGCAGTCGTTTATGGCTTGGTACCTTTGCCACTGCTCACCAGGCTGCTGTTGCTTATGATGAAGCTGCCAAAGCCATGTATGGCCCTTTTGCTCGTCTCAATTTTCCCGACTCTTCTTCTTTGAAACCAATAACAGCAGAGCATTCGGACACGGTATCCCCTGTTGCTTCTTCATGTTCTTCCTCTTCCTTCTTAAATGGAGTATCTGCAGAGAAACTGAACTGTGAGTATGAATCAATGGAGGAACCGAAAGTGAAAGTGGAAGAAACAGCAAGAAATGGAGTCAATTATACAGATGCTAATCCCAATTCTTTATATGATTCTAACATTGGGAACAGATCAACAGAAGGAGATATCAAGGATGGATTAGCTGATGTTGTAAGAAGCCATGATATTAATAAATACAGCCATGATCAGAATGATCCTTCTGAGCTTTGTTTCAAATTTGAAGCAATGGATACAAATGGCTACAATGACATCAACGATTGCAATCAATATTTGCTACAGAAGCTTCAGAGTGATGCATATGCAAGAAGAACTTACTGGATTCCAGCGGAATGGGAGGTCGGCGGTCTCGGGCCGACGAAGAAGGTGATGGAAGGAAAGGGAACGGAGATGGAGAGCTATGTAGACTGTATGGACTTCAACCGTGATCTGAGTTTGTTGCTGGATCGGCAAAAACACATGGGAGTTGGAGATCAGAAAGTTGAGGATTGTAACTTCGAGTTCTTGAGACCTGATTATGATTTTGGGTTGGAGGAGGAAAGGAAATGGCTTGATTCATGCTTCCATGAATGA 1323 42.78 MWLLVFLKIPFRKKLLCTYFPALRFIIKPLLLPFPSPLLLFSPETLKILLVRSESYEQEQEATEVLQSVRSLKRMTSENSNGEKTSRKRRNGFVSVVDTLNKWKKLNNQLEFLAKDGVEEVRRVPAKGSKKGCMRGKGGPQNSDCNFRGVRQRTWGKWVAEIREPIASDTRVKKKGSRLWLGTFATAHQAAVAYDEAAKAMYGPFARLNFPDSSSLKPITAEHSDTVSPVASSCSSSSFLNGVSAEKLNCEYESMEEPKVKVEETARNGVNYTDANPNSLYDSNIGNRSTEGDIKDGLADVVRSHDINKYSHDQNDPSELCFKFEAMDTNGYNDINDCNQYLLQKLQSDAYARRTYWIPAEWEVGGLGPTKKVMEGKGTEMESYVDCMDFNRDLSLLLDRQKHMGVGDQKVEDCNFEFLRPDYDFGLEEERKWLDSCFHE 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4040777 4043881 + CmaCh03G003230.1 Cma03g00323 289894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00323 440 Pfam AP2 domain 145 203 IPR001471 GO:0003700|GO:0006355
Cma03g00323 440 ProSiteProfiles AP2/ERF domain profile. 146 211 IPR001471 GO:0003700|GO:0006355
Cma03g00323 440 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 76 379 - -
Cma03g00323 440 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 76 379 - -
Cma03g00323 440 PRINTS Ethylene responsive element binding protein signature 177 193 IPR001471 GO:0003700|GO:0006355
Cma03g00323 440 PRINTS Ethylene responsive element binding protein signature 147 158 IPR001471 GO:0003700|GO:0006355
Cma03g00323 440 SMART rav1_2 146 217 IPR001471 GO:0003700|GO:0006355
Cma03g00323 440 Gene3D AP2/ERF domain 146 212 IPR036955 GO:0003700|GO:0006355
Cma03g00323 440 CDD AP2 145 213 IPR001471 GO:0003700|GO:0006355
Cma03g00323 440 SUPERFAMILY DNA-binding domain 146 213 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01938 Cma-Chr1:12583784 Cma03g00323 Cma-Chr3:4040777 1.24E-34 dispersed
Cma03g00323 Cma-Chr3:4040777 Cma05g00274 Cma-Chr5:1160764 3.39E-32 dispersed
Cma20g00645 Cma-Chr20:2991403 Cma03g00323 Cma-Chr3:4040777 1.12E-49 transposed
Cma15g00145 Cma-Chr15:681336 Cma03g00323 Cma-Chr3:4040777 2.51E-41 wgd
Cma03g00323 Cma-Chr3:4040777 Cma04g02891 Cma-Chr4:19169439 1.93E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34600 PF00847 AP2 3.20E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00323 - K09286 csv:116403565 563.918