Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g00323 | ATGTGGCTACTTGTGTTTTTAAAGATCCCGTTCAGGAAAAAGCTTTTATGTACTTACTTTCCAGCTCTAAGGTTTATTATAAAACCCCTCCTCCTTCCCTTTCCTTCTCCTTTGCTTCTCTTCTCTCCTGAAACTCTCAAAATTTTACTTGTAAGATCAGAAAGCTACGAACAAGAACAAGAGGCCACCGAAGTGTTGCAATCAGTGAGGAGTTTGAAGCGCATGACGTCTGAGAATTCTAATGGAGAAAAGACATCAAGAAAGAGGCGAAATGGGTTTGTTTCTGTAGTGGACACTTTGAACAAGTGGAAGAAATTGAATAATCAATTGGAGTTTTTGGCAAAAGATGGAGTAGAGGAAGTTCGTCGAGTTCCAGCCAAGGGCTCCAAGAAGGGTTGCATGAGAGGGAAAGGAGGTCCGCAGAATTCAGACTGTAATTTCAGAGGTGTTAGGCAGAGGACTTGGGGTAAGTGGGTGGCTGAGATTAGAGAGCCTATTGCTAGCGATACCCGTGTGAAGAAGAAAGGCAGTCGTTTATGGCTTGGTACCTTTGCCACTGCTCACCAGGCTGCTGTTGCTTATGATGAAGCTGCCAAAGCCATGTATGGCCCTTTTGCTCGTCTCAATTTTCCCGACTCTTCTTCTTTGAAACCAATAACAGCAGAGCATTCGGACACGGTATCCCCTGTTGCTTCTTCATGTTCTTCCTCTTCCTTCTTAAATGGAGTATCTGCAGAGAAACTGAACTGTGAGTATGAATCAATGGAGGAACCGAAAGTGAAAGTGGAAGAAACAGCAAGAAATGGAGTCAATTATACAGATGCTAATCCCAATTCTTTATATGATTCTAACATTGGGAACAGATCAACAGAAGGAGATATCAAGGATGGATTAGCTGATGTTGTAAGAAGCCATGATATTAATAAATACAGCCATGATCAGAATGATCCTTCTGAGCTTTGTTTCAAATTTGAAGCAATGGATACAAATGGCTACAATGACATCAACGATTGCAATCAATATTTGCTACAGAAGCTTCAGAGTGATGCATATGCAAGAAGAACTTACTGGATTCCAGCGGAATGGGAGGTCGGCGGTCTCGGGCCGACGAAGAAGGTGATGGAAGGAAAGGGAACGGAGATGGAGAGCTATGTAGACTGTATGGACTTCAACCGTGATCTGAGTTTGTTGCTGGATCGGCAAAAACACATGGGAGTTGGAGATCAGAAAGTTGAGGATTGTAACTTCGAGTTCTTGAGACCTGATTATGATTTTGGGTTGGAGGAGGAAAGGAAATGGCTTGATTCATGCTTCCATGAATGA | 1323 | 42.78 | MWLLVFLKIPFRKKLLCTYFPALRFIIKPLLLPFPSPLLLFSPETLKILLVRSESYEQEQEATEVLQSVRSLKRMTSENSNGEKTSRKRRNGFVSVVDTLNKWKKLNNQLEFLAKDGVEEVRRVPAKGSKKGCMRGKGGPQNSDCNFRGVRQRTWGKWVAEIREPIASDTRVKKKGSRLWLGTFATAHQAAVAYDEAAKAMYGPFARLNFPDSSSLKPITAEHSDTVSPVASSCSSSSFLNGVSAEKLNCEYESMEEPKVKVEETARNGVNYTDANPNSLYDSNIGNRSTEGDIKDGLADVVRSHDINKYSHDQNDPSELCFKFEAMDTNGYNDINDCNQYLLQKLQSDAYARRTYWIPAEWEVGGLGPTKKVMEGKGTEMESYVDCMDFNRDLSLLLDRQKHMGVGDQKVEDCNFEFLRPDYDFGLEEERKWLDSCFHE | 440 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4040777 | 4043881 | + | CmaCh03G003230.1 | Cma03g00323 | 289894 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g00323 | 440 | Pfam | AP2 domain | 145 | 203 | IPR001471 | GO:0003700|GO:0006355 | |
Cma03g00323 | 440 | ProSiteProfiles | AP2/ERF domain profile. | 146 | 211 | IPR001471 | GO:0003700|GO:0006355 | |
Cma03g00323 | 440 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 76 | 379 | - | - | |
Cma03g00323 | 440 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 76 | 379 | - | - | |
Cma03g00323 | 440 | PRINTS | Ethylene responsive element binding protein signature | 177 | 193 | IPR001471 | GO:0003700|GO:0006355 | |
Cma03g00323 | 440 | PRINTS | Ethylene responsive element binding protein signature | 147 | 158 | IPR001471 | GO:0003700|GO:0006355 | |
Cma03g00323 | 440 | SMART | rav1_2 | 146 | 217 | IPR001471 | GO:0003700|GO:0006355 | |
Cma03g00323 | 440 | Gene3D | AP2/ERF domain | 146 | 212 | IPR036955 | GO:0003700|GO:0006355 | |
Cma03g00323 | 440 | CDD | AP2 | 145 | 213 | IPR001471 | GO:0003700|GO:0006355 | |
Cma03g00323 | 440 | SUPERFAMILY | DNA-binding domain | 146 | 213 | IPR016177 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01938 | Cma-Chr1:12583784 | Cma03g00323 | Cma-Chr3:4040777 | 1.24E-34 | dispersed | |
Cma03g00323 | Cma-Chr3:4040777 | Cma05g00274 | Cma-Chr5:1160764 | 3.39E-32 | dispersed | |
Cma20g00645 | Cma-Chr20:2991403 | Cma03g00323 | Cma-Chr3:4040777 | 1.12E-49 | transposed | |
Cma15g00145 | Cma-Chr15:681336 | Cma03g00323 | Cma-Chr3:4040777 | 2.51E-41 | wgd | |
Cma03g00323 | Cma-Chr3:4040777 | Cma04g02891 | Cma-Chr4:19169439 | 1.93E-31 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34600 | PF00847 | AP2 | 3.20E-13 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g00323 | - | K09286 | csv:116403565 | 563.918 |