Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00330 ATGGTCGATTTCCACCCCGAAATTTCCGTTTCGCCACCGACCCACGACGGCCTCTACTTCTGGCAGTTCATGATCGCCGGGTCAATTGCAGGGTCTGTCGAACACATGACCATGTTTCCAGTGGACACTCTCAAGACACGCATACAAGCCATCGGCGGATCTTCAACAGTCCGACAAGCACTCGGCTTGATTCTAAAGATGGAAGGTCCGGCCGGGCTGTACAGTGGAATTGGGGCAATGGGTCTCGGTGCAGGACCTGCACATGCCGTCTACTTCTCAGTATATGAATTCTGCAAAGAGGGGTTTTCAGTTGGAAATCTTAACAACTCATTAGCACACGCCATTTCTGGGGTGTGTGCAACGGTGGCGAGCGACGCTGTGATAACGCCGATGGATGTGGTGAAACAGAGGCTGCAGTTGAAGAGCAGTCCTTATAAAGGAGTGGGAGACTGCGTGAGGAGAATTTTGGTTGAGGAAGGAATTGGGGCGCTCTATGCATCTTATCGGACCACGGTGCTGATGAATGCACCGTACACGGCTGTCCATTTTGCCACTTATGAAGCGGCAAAAAGGGGATTGAAGGAGATCTCACCGGGAAGTGACAACGACGAGAGGCTGATTGTTCATGCTACAGCCGGAGCAGCAGCTGGGTCTCTTGCTGCTGCTCTTACAACGCCATTAGACGTTGTGAAAACTCGGCTGCAATGCCAGGGAGTATGTGGGTGTGACAGGTTTTCAAGCAGTTCAATTGGGTACGTACTTGGGCGTGTCGTGAAGCAGGACGGCTACAATGGGCTGATGAAGGGATGGATTCCACGGGTGCTTTTCCATGCGCCCGCTGCTGCGATTTGCTGGTCCACCTACGAGGCTTCAAAAACCTTCTTTCAACAGCTCCACCATAGCAACAATTAG 912 52.19 MVDFHPEISVSPPTHDGLYFWQFMIAGSIAGSVEHMTMFPVDTLKTRIQAIGGSSTVRQALGLILKMEGPAGLYSGIGAMGLGAGPAHAVYFSVYEFCKEGFSVGNLNNSLAHAISGVCATVASDAVITPMDVVKQRLQLKSSPYKGVGDCVRRILVEEGIGALYASYRTTVLMNAPYTAVHFATYEAAKRGLKEISPGSDNDERLIVHATAGAAAGSLAAALTTPLDVVKTRLQCQGVCGCDRFSSSSIGYVLGRVVKQDGYNGLMKGWIPRVLFHAPAAAICWSTYEASKTFFQQLHHSNN 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4065207 4066338 - CmaCh03G003300.1 Cma03g00330 289901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00330 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 108 192 IPR018108 -
Cma03g00330 303 Pfam Mitochondrial carrier protein 110 194 IPR018108 -
Cma03g00330 303 Pfam Mitochondrial carrier protein 19 103 IPR018108 -
Cma03g00330 303 Pfam Mitochondrial carrier protein 205 297 IPR018108 -
Cma03g00330 303 Gene3D Mitochondrial carrier domain 105 303 IPR023395 -
Cma03g00330 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 294 IPR018108 -
Cma03g00330 303 PANTHER MITOFERRIN-LIKE 3 302 - -
Cma03g00330 303 PRINTS Mitochondrial carrier protein signature 23 36 IPR002067 GO:0055085
Cma03g00330 303 PRINTS Mitochondrial carrier protein signature 36 50 IPR002067 GO:0055085
Cma03g00330 303 PRINTS Mitochondrial carrier protein signature 123 141 IPR002067 GO:0055085
Cma03g00330 303 PRINTS Mitochondrial carrier protein signature 165 183 IPR002067 GO:0055085
Cma03g00330 303 PRINTS Mitochondrial carrier protein signature 213 235 IPR002067 GO:0055085
Cma03g00330 303 PANTHER MITOFERRIN-1-RELATED 3 302 - -
Cma03g00330 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 18 101 IPR018108 -
Cma03g00330 303 SUPERFAMILY Mitochondrial carrier 16 289 IPR023395 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00330 Cma07g01076 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00724 Cma-Chr2:4396902 Cma03g00330 Cma-Chr3:4065207 2.05E-16 dispersed
Cma03g00330 Cma-Chr3:4065207 Cma20g00327 Cma-Chr20:1604747 1.90E-147 dispersed
Cma03g00330 Cma-Chr3:4065207 Cma07g01076 Cma-Chr7:5743713 4.36E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00330 K15113 - csv:101210464 539.265