Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00348 ATGGGCGATTTCAATCTCGCTCTCGTAATCGTCGCTATTGTCGTCTGTGTGATTGTATTCATCTTCAATGTGTACCTTCTGATTAATTATCAGCATCCTGATGACAAGAACCAGGCGTATTTTCCTAAATTTGTCGTTGTTTTCGGTCTGTCTATTGCGTTGATATCCATTTTGATGTTACCGGCCGACGTCGCTAACCGACAGGCATGCAAGCACGCTTTGTATAACGGTGCATGTAACCTTACATTGCCGATGAAGGATCTATGGCTCGCTATCTATATCGTCGATGCTCTTCTCGTCTTCTTCATTATTCCTTTTGCCATGTTCTACTACGAAGGAGACCAGGACAAGAGCATTGGGGAACGGATGAAAAGCGCCATGATATGGGTTGTGGTAATGGCCATTGTCTGTGCTCTTCTGTTGGGAATTTTATACGGGTTCGTTGGAGAAGTTGACTTTACTGTTATGCATCTCTCTTCAAACACTGCTTCTTTTCCGAATTCATGGGAGTTCTCTAGCAGCCAGCCATGCATTGGAAATGGTGCCCACCAGTGTTCGGCATTCACGGCAAATGCTTCATCAGAGAAAACATGGACAATGCGCACTACTTTTCCCGAATATGTTGTTGCTCTTGCCACTATTGTTGGATCCGTACTCTTCTCTATATTTGGAGGTGTTGGCATTGCTTGTCTGCCCTTGGGCCTCATTTTCTCATTCGTTAGGCGTCCAAAGGCTGTTATCACTCGTTCACAGTATATCAAGGAAGCAACAGAATTGGGAAAAAAGGCAAGAGAACTGAAGAAAGCTGCTGATGCACTCCATCAAGAAGAAAGAAGTGGTTCTAAGGGTAGAAAATGGCGAAAAAATGTGAAGGCTGTAGAGAAGGAGTTGCTTCAATTGGAAGAAGATGTAAATCTTTTAGAAGAGATGTACCCACAGGGAGAAAAGGCGGAGACTGCATGGGCATTGACTGTTCTTGGCTACTTGGCAAAACTTGTGTTGGGAGTTTTGGGGTTGATTGTTTCAGTGGCCTGGGTTGTACATATCATTATATATCTACTAGTTGATCCCCCGCTGTCTCCTTTTCTAAATGAAGTTTTTATCAAGCTGGATGATGTTTGGGGTCTTCTTGGAACTGCAGCATTTGCATTCTTCTGCTTCTACCTTCTTCTAGCAGTGATTGCGGGAGCCATGATGCTTGGCTTGAGACTAGTTTTTATCACAATTCATCCTATGAAGTGGGGAGCCACTCTGATGAGCTCTTTCCTGTTTAATGTGGGGCTCATCCTCCTATGCTCTATCAGTGTGATTCAGTTTTGCTCCACGGCATTTGCGTACTATGCACGAGCAACTGCAGCACAAGAAATCTTTGGACACACATTGCAGTCTCTTCGTGGTATCAGATATTTGTACAAGTATAATGTTTTCCAAATAGCATTCGTTGCGTTGGCAGGATTGACCTTCGTGTATTATGCTGCCTTTGGATGGAGAAGAAAAAAGCCTTCTGGCAGGTTCCAGCTCTCCTCATAA 1530 43.92 MGDFNLALVIVAIVVCVIVFIFNVYLLINYQHPDDKNQAYFPKFVVVFGLSIALISILMLPADVANRQACKHALYNGACNLTLPMKDLWLAIYIVDALLVFFIIPFAMFYYEGDQDKSIGERMKSAMIWVVVMAIVCALLLGILYGFVGEVDFTVMHLSSNTASFPNSWEFSSSQPCIGNGAHQCSAFTANASSEKTWTMRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFVRRPKAVITRSQYIKEATELGKKARELKKAADALHQEERSGSKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEKAETAWALTVLGYLAKLVLGVLGLIVSVAWVVHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMSSFLFNVGLILLCSISVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIRYLYKYNVFQIAFVALAGLTFVYYAAFGWRRKKPSGRFQLSS 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4170804 4176503 + CmaCh03G003480.1 Cma03g00348 289919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00348 509 Coils Coil 256 276 - -
Cma03g00348 509 PANTHER BNAC05G43630D PROTEIN 1 509 - -
Cma03g00348 509 Coils Coil 283 310 - -
Cma03g00348 509 PANTHER LIMR FAMILY PROTEIN DDB_G0283707-RELATED 1 509 - -
Cma03g00348 509 Pfam LMBR1-like membrane protein 9 272 IPR006876 -
Cma03g00348 509 Pfam LMBR1-like membrane protein 278 487 IPR006876 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00348 Cma06g00527 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00348 Cma-Chr3:4170804 Cma07g01055 Cma-Chr7:5612930 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00348 K14617 - csv:101213381 937.176