Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00349 ATGGCTTCCCAATCCGAGCCATGGCTCATGGAAAACGGAACCCTTAAGCGCTTAACCAAGGAGAGTCGCCATGGCCATGGCCGAACAGCCCACAATTTGTCCTCCTCTTCCCTACGCAAAAAGTCCGATTTAACCCTCGTCTCCAAAATCCAATTCGGCTGTCTCCGCAAGTTCCTCATCAATCTTCAGGAGGTCATTTTGGGAACTAAACTTTCCATTCTCTTCCCTGCCATTCCGCTCGCTATTGTCGCTCAGAGTTTCGGGTTTGGAAGACCATGGATTTTTGCTTTGAGCTTGCTTGGCCTCACGCCATTGGCTGAACGTGTCAGCTTCCTGACCGAGCAAATCGCTTATTTCACCGGCCCAACAGTTGGGGGGCTTTTGAATGCAACATGTGGGAATGCGACGGAGATGATAATTGCAATTCTGGCGCTCACACAAGGAAAGATAGACGTGGTGAAGTTCTCTCTTTTGGGCTCTGTTCTTTCCAACCTTCTTCTTGTTCTTGGCACCTCTCTCTTCTGTGGTGGCATTATTAATAAAGAGCAGAGTTATGACAGAAGGCAAGCGGATGTGAACGCACTGATGCTGATGCTGTCATTACTGTGCCACCTATTGCCGTTATTGTTTGGGTACGCCGCCTCCTCCGCCTCCTCCGCCTCCACTGCCGCCGCCTCCACCCTCCACTTGTCCAGAGCCAGCAGCATTGTAATGCTCGCCGCTTACATTGCTTACTTGGTCTTCCAACTCTGGACTCACCGGACATTATTCGAAACTGAGGAAACCGAAGACGACGACGTTTCTGGAGAAGAGGCAGTGATCGGATTCTGGAGTGCATTTGCATGGCTTGCTGGAATGACACTTCTTATTGCTTTGCTGTCTGAATACGTTGTCAACACAATTGAGGAAGCATCTACTACTTGGGGTTTGTCGGTCAGTTTCCTTAGTATAATCTTGCTTCCAATCGTCGGAAATGCAGCCGAACACGCTGGAGCTATCATATTCGCCTTCAAGAATAAGTTGGATATATCATTGGGAGTTGCATTGGGATCTGCAACACAAATTGCACTTTTTGTGATTCCACTGTGTGTGATAGTTGCTTGGACAATGGGAGTGGACATGGACCTGAACTTTAACCTCATGGAAACGGGGTCGCTTGGGTTGGCCATTATTGCCACAGCCTTCACTTTACAAGATGGAACCTCTCACTATATTAAAGGCCTTATTCTTCTCCTCTGCTACATTATCATTGCTGCTTGCTTCTTTGTTTCCAAGACACAAGAAGAATTGGCCTGGATCGAACGCTTGCCGCCTGCCTGCTGGAAAGCTTAG 1332 48.42 MASQSEPWLMENGTLKRLTKESRHGHGRTAHNLSSSSLRKKSDLTLVSKIQFGCLRKFLINLQEVILGTKLSILFPAIPLAIVAQSFGFGRPWIFALSLLGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATEMIIAILALTQGKIDVVKFSLLGSVLSNLLLVLGTSLFCGGIINKEQSYDRRQADVNALMLMLSLLCHLLPLLFGYAASSASSASTAAASTLHLSRASSIVMLAAYIAYLVFQLWTHRTLFETEETEDDDVSGEEAVIGFWSAFAWLAGMTLLIALLSEYVVNTIEEASTTWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIALFVIPLCVIVAWTMGVDMDLNFNLMETGSLGLAIIATAFTLQDGTSHYIKGLILLLCYIIIAACFFVSKTQEELAWIERLPPACWKA 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4186538 4191228 + CmaCh03G003490.1 Cma03g00349 289920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00349 443 Pfam Sodium/calcium exchanger protein 279 420 IPR004837 GO:0016021|GO:0055085
Cma03g00349 443 Pfam Sodium/calcium exchanger protein 93 251 IPR004837 GO:0016021|GO:0055085
Cma03g00349 443 Gene3D - 122 271 IPR044880 -
Cma03g00349 443 Gene3D - 272 423 IPR044880 -
Cma03g00349 443 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 4 430 - -
Cma03g00349 443 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 4 430 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cma03g00349 443 TIGRFAM caca2: calcium/proton exchanger 58 422 - -
Cma03g00349 443 TIGRFAM cax: calcium/proton exchanger 76 422 IPR004798 GO:0006816|GO:0015369
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00349 Cma07g01054 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00661 Cma-Chr1:3455404 Cma03g00349 Cma-Chr3:4186538 1.74E-100 dispersed
Cma03g00349 Cma-Chr3:4186538 Cma06g00684 Cma-Chr6:3411459 4.38E-120 dispersed
Cma03g00349 Cma-Chr3:4186538 Cma06g00231 Cma-Chr6:1173067 2.29E-180 wgd
Cma03g00349 Cma-Chr3:4186538 Cma07g01054 Cma-Chr7:5607832 1.50E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00349 K07300 - csv:101213857 711.835