Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00372 ATGAATCCAGTCACGGAGGCGCTGCCGCCTTTGCTCCTGCAACCCCACCGCCCTTCTACCTCCTGCGACCGTCATCCAGAAGAGCGTTTCACCGGTTTCTGCCCTACATGTCTCTGCGAGCGTCTCGCTGTTCTCGAACCTTCTTCTTCAACTTCTTCCTCTTCTCGAAAGCCGCCGAGTAACTCCTCCGCTGCTGCTGCTGCTCTTAAGGCCATTTTCAGACCCTCCGCTGGTGGTGGAGGTCCTTCTGCCGCCTCTGGCTGGAATAAAACGTCTTCTTTTTTACCTGAGCTTCGTCGGACTAAATCATTTTCGGCGTCCAAGAATGAAGGATTTTCCGGTGTGTTTGAGCCTCAGAGGAAATCATGTGACGTGAGAGTCCGGAATACTCTGTGGACTCTTTTCTCACAGGATGATGAACGGAAGCCATTGAAGAATGAAGCTCCTCGGGTTAACAATGGCGGCGGTGTTCACATTGAAGATGAACCTAGAAATTTGGCCTCCTCGTCTGTTGTTCGTGGTCCGGTTTTGGAACCGGAGGAAGAAGAAGAAGACGAAACTGAACCTGAAATAGAGATTTCTGGAGAATCCGATGCCGGTAATGTAGTCGACGACAGAGTCCAAGAAATCCAGGAAGAAGAGGATGAAGAAGAAGAAGAGGAGGAAGAGGAGAATGAAGAACCAAGCCGGCCGGAAATTGAACCAGTACAAGACGATTTCAAGAGAGTAAAGGATCACATAGATCTCGATTCCCAACCCAAGAAACCCTCCGGTCGGGACTTCAAGGAGATCGCCGGGAGTTTCTGGTCAGCCGCTTCTGTTTTCAGCAAGAAATGGCAGAAATGGAGAGACAAGCAGAAGCTCAAGAAGAGCAGAAATGGCGGTGGCTCCGCCACATTGCCGGTGGAGAAGCCGATCGGACGTCAATTCAGAGAAACACAGTCGGAGATAGCCGATTACGGCTATGGCCGTCGGTCCTGCGATACCGATCCCAGATTCTCCCTCGACGCCGGCCGAATGTCCTTCGACGATCCTCGTTACTCCTTCGATGAACCACGAGCTTCTTGGGATGGCTATTTAGTTAGCCGTACTTTCACCAGAATGCCGACGATGCTCTCTGTTGTTGAAGATGCTCCGATTCATGTTTCTCGAACGGATACTCAAATTCCGGTCGAAGAACCTGCAATTTCCGGCAATGACGATGAAACCGTCCCAGGTGGTTCGGAACAAACCAGAGATTACTACTCCGACTCCTCTCGCCGGAGAAGAAGCCTCGACAGATCAAGCTCACTAAGGAAGACGGCAGCGGCAGTCGTTGCGGATATGGACGAGATTAAATCATCCTCAAACGCGAAAGTCTCTCCGGCAACAGCCGATTTCTTTTCCGGACCGAAATTGGTAGTTCCAGACAAAGTCCTAAGAGATTCCAACACGAATTCCTTACGAGACGACTGTTCGGAGACCTTCGAAATTCCTTTCAGAAACGTAGACCGGAAGGAGGCGAAAAAGTCCCGCCGTTGGGGGAAGGGCTGGAACATTTTGGCGTTCATACACCGGCGAGCCAGCAACAAATACGAAGACGAAGACAGATATAGCACTAGAACTAACGGCGTAACGAGATCCTTATCGGAATCATGGCCTGAATTTCGAGGCGAACGTAACGGCGAGGTTAGAGGAATCGGCGGAGGAATGGGTTTTAACCCCAAAATGATGAGAAGCAACAGCAGCGTGAGCTGGAGGAGCTTGCAGAACAACAATGGCGGGTCATTTGGAAGCATGAGAAAGAGCAATGTGGAAACAAGCAGCGGATTCTTTAGGAAGAAGAAAGAAGATTTCGTGTTGGAGAGAAATCATAGTGCTAGATTTTCAACCAACGACGTCGTCGACAATGGACTTCTACGGTTCTATGTAACGCCGATGAAGGGCGGCCGGCGAGGGGAAATCGTGAAGAACCGGCCGAATCCAGCTCAGTCCATCGCCAGAAGTGTGCTGAGATTGTACTGA 2004 50.65 MNPVTEALPPLLLQPHRPSTSCDRHPEERFTGFCPTCLCERLAVLEPSSSTSSSSRKPPSNSSAAAAALKAIFRPSAGGGGPSAASGWNKTSSFLPELRRTKSFSASKNEGFSGVFEPQRKSCDVRVRNTLWTLFSQDDERKPLKNEAPRVNNGGGVHIEDEPRNLASSSVVRGPVLEPEEEEEDETEPEIEISGESDAGNVVDDRVQEIQEEEDEEEEEEEEENEEPSRPEIEPVQDDFKRVKDHIDLDSQPKKPSGRDFKEIAGSFWSAASVFSKKWQKWRDKQKLKKSRNGGGSATLPVEKPIGRQFRETQSEIADYGYGRRSCDTDPRFSLDAGRMSFDDPRYSFDEPRASWDGYLVSRTFTRMPTMLSVVEDAPIHVSRTDTQIPVEEPAISGNDDETVPGGSEQTRDYYSDSSRRRRSLDRSSSLRKTAAAVVADMDEIKSSSNAKVSPATADFFSGPKLVVPDKVLRDSNTNSLRDDCSETFEIPFRNVDRKEAKKSRRWGKGWNILAFIHRRASNKYEDEDRYSTRTNGVTRSLSESWPEFRGERNGEVRGIGGGMGFNPKMMRSNSSVSWRSLQNNNGGSFGSMRKSNVETSSGFFRKKKEDFVLERNHSARFSTNDVVDNGLLRFYVTPMKGGRRGEIVKNRPNPAQSIARSVLRLY 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4287670 4289673 - CmaCh03G003720.1 Cma03g00372 289943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00372 667 MobiDBLite consensus disorder prediction 1 25 - -
Cma03g00372 667 MobiDBLite consensus disorder prediction 384 428 - -
Cma03g00372 667 MobiDBLite consensus disorder prediction 178 193 - -
Cma03g00372 667 MobiDBLite consensus disorder prediction 230 260 - -
Cma03g00372 667 MobiDBLite consensus disorder prediction 208 229 - -
Cma03g00372 667 MobiDBLite consensus disorder prediction 143 260 - -
Cma03g00372 667 Coils Coil 203 227 - -
Cma03g00372 667 PANTHER PROTEIN: UPF0503-LIKE PROTEIN, PUTATIVE (DUF740)-RELATED 1 667 IPR008004 -
Cma03g00372 667 MobiDBLite consensus disorder prediction 414 428 - -
Cma03g00372 667 Pfam Protein of unknown function (DUF740) 9 645 IPR008004 -
Cma03g00372 667 PANTHER PROTEIN: UPF0503-LIKE PROTEIN, PUTATIVE (DUF740)-RELATED 1 667 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00372 Cma06g00248 CCT
Cma03g00372 Cma14g00086 CCT
Cma03g00372 Cma07g01046 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00765 Cma-Chr2:4595518 Cma03g00372 Cma-Chr3:4287670 1.80E-94 dispersed
Cma03g00372 Cma-Chr3:4287670 Cma20g00366 Cma-Chr20:1768788 2.23E-103 dispersed
Cma14g00086 Cma-Chr14:394474 Cma03g00372 Cma-Chr3:4287670 0 wgd
Cma03g00372 Cma-Chr3:4287670 Cma06g00248 Cma-Chr6:1240207 0 wgd
Cma03g00372 Cma-Chr3:4287670 Cma07g01046 Cma-Chr7:5522385 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00372 - - csv:101218563 1053.12