Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00375 ATGGACTTAAATGCTTCGCCGGTGCCTGAAGAGGATGAAGAGACGTTTGATAGAAATGAAGTGGTGTATAGTGCTCCAGAGGATCATATAGAGACTGGTGCCAGTATTGCACGGCGGGAACGAGAAGAAAGAAAAAGGCGGTTGAAAAGAGATCGCTCTATTGAGAGACCGGTGCATGAACACCAACAGGCGGCACGGGATCAGTCTTACCCTGCTAAAAACCAAAAAACCGTTAGAAGCAGGCTTCCTCCAGGTTGGTTGGATTGCCCTGCTTTTGGTCAAGAAATATGTTGCATGATTCCTTCCAAAGTTCCTCTGGGTGACACCTTCAGTGATTGTGTAGCGCCTGGTAAAAGATATGCATTTAAGCAAGCGATCCATCAGCAGAGAGTTTGGGGGAGAAAACTCGGTTTGGTGATTGATTTGACAAATTCTTATCGTTATTATACAACAACAGATTTGAATAAAGAGGGTATCAAGTATGTTAAGATTCCTTGCAAGGGGAGGGATTCTGTACCTGACAACAAGTCAGTCAATATGTTCGTTTACGAGGTCAGTCAGTTTATTTCTCGTCAGAAACACTCAAAGAAGTATATTCTTGTCCATTGCACGCATGGCCATAATCGCACTGGATATATGATCATAAATTATCTTGCGCGTGCACTATCCATTTCTGTTACCCAGGCTCTTAAAATGTTTTCCGATGCACGTCCTCCTGGAATTTACAAGCCAGATTACATTGATGCATTATATGACTTCTATCATGAAAAAAAACCTGAATTGGTTGTTTGCCCAACCACACCTGAGTGGAAGAGATCCTCAGATCTTGATCTTAATGGTGAAGCAGTTCCGGATGATGATGATGATGGAGGTTCTGCTGCTCCTTTGAATGAAAATCATGATGATGCTGCTCAAGTGATGACAAATGATGATATATTGGGTGATGAGATACCTGAGGACCAAGAACGTGCTTTTAAACACTTCTGCTATCAAATGCTTAAAATGAATGCGGGAGCAAGAGCGAATTTGCAATTTCCCGGGTCGCATCCTGTGTCTCTTAACAGAGAGAATCTTCAACTGCTAAGGCAACGCTATTATTATGCCACGTGGAAAGCTGATGGAACAAGATATATGATGCTAATAACCATGGATGGATGCTACTTGATTGACAGGGGTTTTAAATTTAGAAGAGTCCAAATGAGATTTCCGTACAGAAATGCAAATGATGGCCTAGTTGAGAAGATTCACAACTACACACTCCTTGATGGAGAAATGATCATTGACACTCTGCCGGACTCACAGAAGCAAGAGAGAAGATATCTTATATATGATATGATGGCAATTAATCATGTTTCAGTCACTGAGCGTCCTTTCTATGAACGGTGGAAGATGCTTGAGAAAGAAGTGATCGAACCTCGTAATTACGAGCGCCAGAATATTTACCAAAGTAGGAACCCTCAGTATAGATATGACCTAGAGCCATTCAGGGTGAGGAGGAAAGACTTTTGGTTGCTCTCCACAGTTACCAAACTTTTGAAGGAGTTCATACCGAGGCTTTCACATGATGCCGATGGTCTAATATTTCAGGGGTGGGATGATGCTTATGTTCCTCGAACTCATGAGGGTCTTTTAAAGTGGAAATATCCAGAAATGAATTCAGTCGACTTCCTTTTCGAGGTTATGGGGGACGATGATTCTCAGACGCTTATTTTGTTTGAACGAGGAAAGAGGAAAACAATGGAAGGAAATAGGGTTAAGTTCAAAGATGGCGATCCTTCCTTCTATTCAGGAAAGATTGTTGAGTGCTCTTGGGATTCTGATGAACGAGTATGGGTCTGTATGCGTGTCAGGACAGACAAAACAACTCCTAATGATTTCAATACATATAGAAAGGTCATGCGGAGCATTAAAGACAACATCACGGAGGAGGATTTGTTGAAGGAAATTCATGAGATCATACGCTTGCCCATGTATGCTGATAGGATAAGGAATGATAGCTACGGTGGCGGCCACATGAAATTCTCGGGGATTTCAGCTCTTTTTATTTGTTTAATTCTCTTTGCTCCGTCGAATTTGATTCACGGTGAGGAGACCAAGAAAAACAAATTTCGGGAACGAGTAGCCACGGATGATGCCCTTGGATACCCTGAGATAGATGAGGATGCTTTGTTGAATACACAATGCCCAAAGAATTTGGAGCTACGATGGCAAACGGAAGTAAGTTCTAGCGTGTATGCTACCCCCTTGATCGCTGATATTAACAGTGATGGGAAGCTTGAGATAGTGGTTCCATCTTTTGTTCACTACCTTGAAGTTTTAGAAGGTTCTGATGGAGATAAAATGCCAGGGTGGCCTGCTTTCCATCAGTCAACTGTGCACGCTAGTCCTCTTCTGTATGATATAGACAAAGATGGTGTGAGGGAAATAGCTTTGGCCACATACAATGGAGAAGTACTCTTTTTCAGGGTGTCAGGATATCTGATGACAGATAAGTTAGAGATACCACGTCGCCGTGTGCGCAAGAATTGGTATGTGAGTCTAAATCCAGATCCAGTGGACCGATCTCATCCAGATGTTCATGATGAACAACTTATCACAGAAGCAATGAATTCAAAATCAACGTCTCAAACAAATGGAAGTGTTCCAGAGTTAAACCATACAACCCAGACCTTGATGAATGGAAGTGTGACTGAACTAAATACTTCGGCTACCATACCAAATCAAATGTTGAATGTTTCAGATACCATGAATAACAGTAACGTGAATGACAGAAAAGTCGAACCAGATATTGTCCTGCCTACAAGCATGACCAATAATGCTTCTATGAATGTTACAACTGGAAATCTCGATGATAAGAATGCAACTGGGACGAGTAGAAGACTTTTGGAAGTTAATGACCCCAAACAATCTGAAGAAGATGGTTCTGGGTCCAATACAAATGGTAGTGGAGATGAGCATGTTGCCACAGTTGAAAATGATGAACCTTTAGAAGCAGGGGCTGATCAATCATTTGAGATATTCCGTGAAAATGATGAACTTGCTGATGAGTATAATTATGACTATGATGATTATGTTGATGAATCCATGTGGGGAGATGAGGAGTGGACTGAAGATAAGCATGAAAAAGTGGAGGAACATGTGGATATTGACGCACATTTATTGTGCACTCCTGTCATAGCTGACATAGACAATGATGGGGTATCTGAAATGATTGTAGCTGTTTCATACTTTTTTGATCACGAGTACTACGATAACCCAGAGCACAAGAAAGAATTGGGTGATCTTGATATTGGGAAATATGTAGCTGGTGCTATTGTTGTTTTCAATCTGGATACAAAGCAAGTGAAGTGGACAGCTGAACTAGACTTGAGCACAGATTCTGCAAACTTTCGTGCTTATATATATTCCTCCCCTACTGTCATTGATTTGGATGGTGATGGGAATCTGGATATTCTTGTTGGAACATCCTATGGCTTGTTCTATGTCTTGGATCATCAAGGCAAGGTGAGAGAAAAATTTCCTCTTGAAATGGCTGATATTCAGGGAGCTGTTGTTGCAGCTGATATCAATGATGATGGAAAAATTGAACTTGTAACTGCTGATACACACGGAAATATTGCTGCCTGGACTGCTCGAGGTGAAGAAATTTGGGAAAAGAATCTAAAGAGTCTTATACCGCAGGGTCCCTCCATTGGCGATGTCAATGGGGATGGTCATACTGATGTGGTGGTACCAACAGTATCAGGAAATATATATGTTCTGAGTGGCAAGGATGGGTCATTTGTTCGTCCTTACCCCTATAGAACCCATGGAAGAGTGATGAATCAAATTCTTCTCGTTGATCTGAATACACGTAATGACAAAAAGAAGGGACTTACTCTAGTCACATCATCATTTGATGGCTATTTGTATCTCATTGATGGACCTACATCCTGTGCTGATGTTATTGACATCGGCGAGACGTCATATAGCATGGTTCTGGCTGACAATGTTGATGGTGGAGATGACCTTGATCTTATTGTCTCAACCATGAATGGGAATGTTTTCTGCTTTTCAACTCCTGCTCCTCACCATCCCCTCAAGGAATGGAGATCAACTAATCAAGGACGAAACAACGTTGCAACTCGGTACAACCGTGAAGGTGTTTTCATTTCACAGTCCTCTAGAACTTTCCGTGATGAGGAAGGCAAGAACTTCTGGGTTGAGATCGAGATTGTAGACCGTTACAGAAATCCATCTGGAACACAAGCACCATATAACATCACTACAACCTTGATGGTTCCTGGCAATTACCAGGGAGAGAGGAAAATAAAACAAAACCAGATCTTCAAAGAACCAGGCAAATATCGGATCAAACTTCCAACCGTCAGTGTTAGAACCACAGGCACTGTTTTGGTGGAGATGGTTGACAAGAATGGACTCTATTTTTCAGATGAGTTCTCCCTCACATTCCACATGTATTATTATAAGCTTCTGAAGTGGCTTCTCGTCCTCCCCATGCTTGGAATGTTTGGTGTACTCATGATCCTTCGCCCGCAAGAGCCTGTTCCATTGCCATCGTTTTCCCGGAACACTAACCTATGA 4584 41.86 MDLNASPVPEEDEETFDRNEVVYSAPEDHIETGASIARREREERKRRLKRDRSIERPVHEHQQAARDQSYPAKNQKTVRSRLPPGWLDCPAFGQEICCMIPSKVPLGDTFSDCVAPGKRYAFKQAIHQQRVWGRKLGLVIDLTNSYRYYTTTDLNKEGIKYVKIPCKGRDSVPDNKSVNMFVYEVSQFISRQKHSKKYILVHCTHGHNRTGYMIINYLARALSISVTQALKMFSDARPPGIYKPDYIDALYDFYHEKKPELVVCPTTPEWKRSSDLDLNGEAVPDDDDDGGSAAPLNENHDDAAQVMTNDDILGDEIPEDQERAFKHFCYQMLKMNAGARANLQFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRGFKFRRVQMRFPYRNANDGLVEKIHNYTLLDGEMIIDTLPDSQKQERRYLIYDMMAINHVSVTERPFYERWKMLEKEVIEPRNYERQNIYQSRNPQYRYDLEPFRVRRKDFWLLSTVTKLLKEFIPRLSHDADGLIFQGWDDAYVPRTHEGLLKWKYPEMNSVDFLFEVMGDDDSQTLILFERGKRKTMEGNRVKFKDGDPSFYSGKIVECSWDSDERVWVCMRVRTDKTTPNDFNTYRKVMRSIKDNITEEDLLKEIHEIIRLPMYADRIRNDSYGGGHMKFSGISALFICLILFAPSNLIHGEETKKNKFRERVATDDALGYPEIDEDALLNTQCPKNLELRWQTEVSSSVYATPLIADINSDGKLEIVVPSFVHYLEVLEGSDGDKMPGWPAFHQSTVHASPLLYDIDKDGVREIALATYNGEVLFFRVSGYLMTDKLEIPRRRVRKNWYVSLNPDPVDRSHPDVHDEQLITEAMNSKSTSQTNGSVPELNHTTQTLMNGSVTELNTSATIPNQMLNVSDTMNNSNVNDRKVEPDIVLPTSMTNNASMNVTTGNLDDKNATGTSRRLLEVNDPKQSEEDGSGSNTNGSGDEHVATVENDEPLEAGADQSFEIFRENDELADEYNYDYDDYVDESMWGDEEWTEDKHEKVEEHVDIDAHLLCTPVIADIDNDGVSEMIVAVSYFFDHEYYDNPEHKKELGDLDIGKYVAGAIVVFNLDTKQVKWTAELDLSTDSANFRAYIYSSPTVIDLDGDGNLDILVGTSYGLFYVLDHQGKVREKFPLEMADIQGAVVAADINDDGKIELVTADTHGNIAAWTARGEEIWEKNLKSLIPQGPSIGDVNGDGHTDVVVPTVSGNIYVLSGKDGSFVRPYPYRTHGRVMNQILLVDLNTRNDKKKGLTLVTSSFDGYLYLIDGPTSCADVIDIGETSYSMVLADNVDGGDDLDLIVSTMNGNVFCFSTPAPHHPLKEWRSTNQGRNNVATRYNREGVFISQSSRTFRDEEGKNFWVEIEIVDRYRNPSGTQAPYNITTTLMVPGNYQGERKIKQNQIFKEPGKYRIKLPTVSVRTTGTVLVEMVDKNGLYFSDEFSLTFHMYYYKLLKWLLVLPMLGMFGVLMILRPQEPVPLPSFSRNTNL 1527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4303120 4321019 - CmaCh03G003750.1 Cma03g00375 289946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00375 1527 SUPERFAMILY Nucleic acid-binding proteins 550 663 IPR012340 -
Cma03g00375 1527 Gene3D DNA ligase/mRNA capping enzyme 302 545 - -
Cma03g00375 1527 MobiDBLite consensus disorder prediction 971 986 - -
Cma03g00375 1527 Pfam mRNA capping enzyme, C-terminal domain 551 646 IPR013846 -
Cma03g00375 1527 Pfam Dual specificity phosphatase, catalytic domain 134 254 IPR000340 GO:0008138|GO:0016311
Cma03g00375 1527 SUPERFAMILY Integrin alpha N-terminal domain 724 1283 IPR028994 -
Cma03g00375 1527 Gene3D - 546 655 IPR012340 -
Cma03g00375 1527 MobiDBLite consensus disorder prediction 936 987 - -
Cma03g00375 1527 ProSitePatterns Tyrosine specific protein phosphatases active site. 201 211 IPR016130 GO:0016311|GO:0016791
Cma03g00375 1527 MobiDBLite consensus disorder prediction 1 17 - -
Cma03g00375 1527 MobiDBLite consensus disorder prediction 1 76 - -
Cma03g00375 1527 Pfam mRNA capping enzyme, catalytic domain 349 547 IPR001339 GO:0004484|GO:0005524|GO:0006370
Cma03g00375 1527 Gene3D - 1031 1358 IPR015943 GO:0005515
Cma03g00375 1527 Gene3D Protein tyrosine phosphatase superfamily 78 290 IPR029021 -
Cma03g00375 1527 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 179 248 IPR000387 GO:0016311|GO:0016791
Cma03g00375 1527 MobiDBLite consensus disorder prediction 32 63 - -
Cma03g00375 1527 MobiDBLite consensus disorder prediction 273 301 - -
Cma03g00375 1527 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 82 271 IPR029021 -
Cma03g00375 1527 PANTHER PROTEIN DEFECTIVE IN EXINE FORMATION 1 680 1527 - -
Cma03g00375 1527 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 309 548 - -
Cma03g00375 1527 MobiDBLite consensus disorder prediction 936 963 - -
Cma03g00375 1527 ProSiteProfiles ATP-dependent DNA ligase family profile. 431 577 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Cma03g00375 1527 ProSiteProfiles Dual specificity protein phosphatase domain profile. 109 260 IPR020422 GO:0006470|GO:0008138
Cma03g00375 1527 CDD RNA_5'-triphosphatase 85 252 - -
Cma03g00375 1527 CDD Adenylation_mRNA_capping 342 548 IPR001339 GO:0004484|GO:0005524|GO:0006370
Cma03g00375 1527 SMART dsp_5 116 256 IPR020422 GO:0006470|GO:0008138
Cma03g00375 1527 PANTHER - 680 1527 IPR045232 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00375 Cma-Chr3:4303120 Cma07g01044 Cma-Chr7:5469300 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00375 - - csv:101209717 1549.26