Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00384 ATGGCAGAACAGCTTCAAGTGTTCGGTTTCTGGGAAAGTGCCTTCAGTCGCAGAGTGGAGCTAGCTCTCAAACTCAAAGGCATCGAATACCAATACTTCGAGGAAGATTTGCCCCACAACAAGAGCCATTTGCTTCTCCAATACAACCCAATTCACAAAAAGGTCCCTGTTCTTGTCCACAATGGAAAACCCATTTCAGAGTCTCTTGTAATCCTCGAGTACATCGATGAAAATTGGAAAACAAACCCATTATTGCCTCAACATCCCCATGACAGAGCTGTTGCCAGATTCTGGGCTAAGTTCATCGATGACAAGGTTGTGGTGGCGGTAGTGAAGGCTGCTGGAAGCAAAGGAGAAGAGAGAGAGAAGGCTGTGGAGGAGGCAGGGGAGGCATTGGGAGCGCTTGAGAAAGAGCTTGGAAGCAGGACGTTGTTTGGAGGGGAGAGGGTTGGGTTTGTGGATGTTGTTGGGAGTGTGATCGTGGGATGGGTTCCTGCCATTGAAGAATGCTTTGGGTTTGAGGTGCTGAGAGTTAATAAGTTCCCTAATTTGATGAAATGGAGTGAAGAATTTGCTAAGCATGGCGTGGTGAAGGAGATTCTGCCTCCTAAACATGAGATTGTTGCATTTATGGAAGCTAATTGGAAATTTTGA 654 46.48 MAEQLQVFGFWESAFSRRVELALKLKGIEYQYFEEDLPHNKSHLLLQYNPIHKKVPVLVHNGKPISESLVILEYIDENWKTNPLLPQHPHDRAVARFWAKFIDDKVVVAVVKAAGSKGEEREKAVEEAGEALGALEKELGSRTLFGGERVGFVDVVGSVIVGWVPAIEECFGFEVLRVNKFPNLMKWSEEFAKHGVVKEILPPKHEIVAFMEANWKF 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4366133 4366923 + CmaCh03G003840.1 Cma03g00384 289955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00384 217 Pfam Glutathione S-transferase, N-terminal domain 4 77 IPR004045 -
Cma03g00384 217 Gene3D Glutaredoxin 1 84 - -
Cma03g00384 217 SFLD Main (cytGST) 2 213 - -
Cma03g00384 217 Pfam Glutathione S-transferase, C-terminal domain 105 192 IPR004046 -
Cma03g00384 217 SUPERFAMILY GST C-terminal domain-like 77 214 IPR036282 -
Cma03g00384 217 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 212 IPR045073 -
Cma03g00384 217 CDD GST_C_Tau 89 213 IPR045074 GO:0004364|GO:0006749
Cma03g00384 217 Gene3D - 85 217 - -
Cma03g00384 217 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
Cma03g00384 217 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
Cma03g00384 217 CDD GST_N_Tau 5 79 - -
Cma03g00384 217 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 217 IPR010987 -
Cma03g00384 217 PANTHER GLUTATHIONE S-TRANSFERASE U8 1 212 - -
Cma03g00384 217 SFLD Main.3: Omega- and Tau-like 2 213 IPR045073 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00384 Cma-Chr3:4366133 Cma07g01029 Cma-Chr7:5368867 2.96E-90 dispersed
Cma06g01135 Cma-Chr6:7652425 Cma03g00384 Cma-Chr3:4366133 1.57E-11 dispersed
Cma03g00384 Cma-Chr3:4366133 Cma03g00390 Cma-Chr3:4381011 3.39E-84 proximal
Cma03g00383 Cma-Chr3:4364137 Cma03g00384 Cma-Chr3:4366133 6.21E-107 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00384 K00799 - csv:105435246 312.383