Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00397 ATGGCGGAGGGTTTTGAACTCTACCATGTCCCACAGCAAAGCAGGCGAGACAAGCTGAGAGTAGGAGTTGGGAGTGGCGCTACTAATAATCCCAATTTCCTTCCTTTATATCATGATGATGATGGTGATCCCTCTTCTTTAATCTCCCCCGATTTTGATTTTCATCAAAACCCCTCTTTTAATCTTCATAATCATAATCATTACCCTCCCACTCCCCCTGCTGCTTTCGCCACCACCGCCCACCATCTCCCCCCGCTCCTCCCCGACCAACAACAACCACCCTTGTCCCTTGACCTCAACCTCCAACACCGCTACGCCTCTTCCCCCGCCGCTTTCTCTCCTCTTCTTACCTCCAAATTCTTGAAGCCAGCTCAGCAGCTACTCCACGACCTATTCCACTACGCCGGCAAGTTCCCGCCTGATTCCCCCCTTGTTGACCCTCTTCTTGACAGCTTGGGCGCTGATATTCCCACTGCCGCTCTTCATCATGACCCCACCGACGATGGAATTGAAAGCCGGAGGAGAAAATCTAGGCTTATTACCATGCTCGACGAGGTTTATAGAAGATATAGGCTATACTATCAGCAGATGCAGGCAGTGGTGACAACATTCGAGTACGTTGGTGGGCTTGGCAATGCAGCTCCCTACGCGAACTTAGCCGTGAAAGCCATGTTTAAGCACTTCAGATTCTTAAAGAATGCCATTGCCGACCAGCTCCAATTGAACAAGCAGCATCAGCAGCAGCAGCAGCCGCCGCCGCCTTATAACCCGTACTGTCAAAGATCTATTCACAACAACAGTGGGGGATTCGTGGATCACCAACCCGTTTGGCGCCCGCAGAGAGGCCTCCCAGAGAGTGCTGTCACCGTCCTCCGAGCTTGGCTGTTTGAACATTTCCTCCATCCTTATCCTACGGATACCGACAAGCTCATGCTGGCTAACCAGACTGGTCTCTCGCGAAGCCAGGTATCAAACTGGTTCATCAATGCAAGAGTGAGGCTATGGAAACCAATGGTGGAAGAAATCCACATGCTAGAAACAAGGGAAGCTCAGAAATCTCAGCACAGGGACGCCAATAATGGAACTCCCTTAAACAACAACGACGACCATCTTTCATCCACAAACCAATCATTGAATAACGCATCTTCTTCAAACCATGACCAACACCCACTCCACTTATCCAGCTCCAATTTCTTTCCGACCCACCACCCTCACGCGCCTGCCGGAGCCACCACGATGGGCGCCGGCAACGTTTCCTTAACTCTGGGGCTCCACCAGAATCACGGCGGGATCACTCTCACGGAGCCGTTTCCGATCAATGCAGCTCAGCATTTTAACCTTGGGTTAGAAGCCAACGGTGAAGGGTTTGTAAATGAGTGGTTTTGA 1386 51.15 MAEGFELYHVPQQSRRDKLRVGVGSGATNNPNFLPLYHDDDGDPSSLISPDFDFHQNPSFNLHNHNHYPPTPPAAFATTAHHLPPLLPDQQQPPLSLDLNLQHRYASSPAAFSPLLTSKFLKPAQQLLHDLFHYAGKFPPDSPLVDPLLDSLGADIPTAALHHDPTDDGIESRRRKSRLITMLDEVYRRYRLYYQQMQAVVTTFEYVGGLGNAAPYANLAVKAMFKHFRFLKNAIADQLQLNKQHQQQQQPPPPYNPYCQRSIHNNSGGFVDHQPVWRPQRGLPESAVTVLRAWLFEHFLHPYPTDTDKLMLANQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETREAQKSQHRDANNGTPLNNNDDHLSSTNQSLNNASSSNHDQHPLHLSSSNFFPTHHPHAPAGATTMGAGNVSLTLGLHQNHGGITLTEPFPINAAQHFNLGLEANGEGFVNEWF 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4419767 4423499 + CmaCh03G003970.1 Cma03g00397 289968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00397 461 CDD homeodomain 277 338 IPR001356 GO:0003677
Cma03g00397 461 SMART HOX_1 277 341 IPR001356 GO:0003677
Cma03g00397 461 ProSiteProfiles 'Homeobox' domain profile. 274 337 IPR001356 GO:0003677
Cma03g00397 461 MobiDBLite consensus disorder prediction 356 401 - -
Cma03g00397 461 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 9 95 438 - -
Cma03g00397 461 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 95 438 - -
Cma03g00397 461 Pfam Associated with HOX 115 236 IPR006563 -
Cma03g00397 461 SMART prehox3 109 237 IPR006563 -
Cma03g00397 461 Pfam Homeobox KN domain 294 333 IPR008422 GO:0003677|GO:0006355
Cma03g00397 461 MobiDBLite consensus disorder prediction 348 412 - -
Cma03g00397 461 Gene3D - 280 342 - -
Cma03g00397 461 SUPERFAMILY Homeodomain-like 279 343 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00397 Cma06g00271 CCT
Cma03g00397 Cma14g00107 CCT
Cma03g00397 Cma06g00271 ECH
Cma03g00397 Cma14g00107 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00397 Cma-Chr3:4419767 Cma01g00505 Cma-Chr1:2580105 8.59E-71 dispersed
Cma14g00107 Cma-Chr14:468152 Cma03g00397 Cma-Chr3:4419767 6.41E-114 wgd
Cma03g00397 Cma-Chr3:4419767 Cma06g00271 Cma-Chr6:1331793 1.01E-98 wgd
Cma03g00397 Cma-Chr3:4419767 Cma07g01019 Cma-Chr7:5289253 3.50E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34607 PF07526 POX 1.10E-29 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00397 - - cmos:111453568 826.624