Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00404 ATGGCTTTGTGCCGCATAAATCTTCCTCACCGGTGTTCTTCCGGAACACCGCGCCTTGCCCCCACTTGGTCCCTCCAAAACCCTAATCCTCCTCAATTACTTTCTCCTTTTCCATCTCTTCTCAATTCCAATAAGTTATCCTATTCCAGAATCCGGCGCCGAAGCTTTATTGCCATGAACGCTCACATGGCCACGGAACCCAAGCCTGTTTCAGATGATAGAATGCTCGTTTATGTTCCTCCTCATCCGTTGATCAAGCACTGGGTTTCAGTTTTGAGGAATGAACAAACTCCTTGCCCCATTTTTAAAAATGCAATGGCAGAGCTAGGAAGACTGCTTATTTATGAAGCTTCAAGGGATTGGCTGCCTACTGTAACGGGGGAGATACAGTCACCCATGGGTGTTGCTTCAGTTGAGTTTGTCGATCCAAGAGAGCCTGTGGCGATAATTCCCATCCTCAGAGCCGGTCTAGCTCTTGCAGAATACGCATCATCTGTATTGCCTGCAACAAAAATGTACCATCTTGGGATAAGCAGGGACGAGGAGACTCTTCAACCAACTATATATCTTAACAAGTTACCTGAAAATTTTCCTGAAGGTTCTCGAATTTTTGTGGTTGATCCCATGCTTGCAACAGGTGGCACAGTTGTGGCAGCTCTTGATCTCATAAAGGAACGTGGAATTGACAACAAGCAAATAAAAGTGATATCTGCTGTTGCTGCACCTCCCGCTCTAAAAAAGCTCGGCGAGAAGTTTCCAGGGCTACACGTATACACCGGAATTATTGACCCGACAGTTAACGAAAAAGGGTTTATAATTCCTGGACTTGGAGATGCTGGCGATCGCAGCTTTGGCACATGA 861 46.11 MALCRINLPHRCSSGTPRLAPTWSLQNPNPPQLLSPFPSLLNSNKLSYSRIRRRSFIAMNAHMATEPKPVSDDRMLVYVPPHPLIKHWVSVLRNEQTPCPIFKNAMAELGRLLIYEASRDWLPTVTGEIQSPMGVASVEFVDPREPVAIIPILRAGLALAEYASSVLPATKMYHLGISRDEETLQPTIYLNKLPENFPEGSRIFVVDPMLATGGTVVAALDLIKERGIDNKQIKVISAVAAPPALKKLGEKFPGLHVYTGIIDPTVNEKGFIIPGLGDAGDRSFGT 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4441775 4445825 - CmaCh03G004040.1 Cma03g00404 289975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00404 286 CDD PRTases_typeI 142 262 IPR000836 -
Cma03g00404 286 Pfam Uracil phosphoribosyltransferase 79 286 - -
Cma03g00404 286 SUPERFAMILY PRTase-like 77 285 IPR029057 -
Cma03g00404 286 PANTHER URACIL PHOSPHORIBOSYLTRANSFERASE-LIKE 33 282 - -
Cma03g00404 286 PANTHER URIDINE KINASE 33 282 - -
Cma03g00404 286 Gene3D - 69 286 IPR029057 -
Cma03g00404 286 TIGRFAM upp: uracil phosphoribosyltransferase 77 286 IPR005765 GO:0004845|GO:0006223
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00404 K00761 upp, UPRT; uracil phosphoribosyltransferase [EC:2.4.2.9] - csv:101209447 486.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00404 Cma-Chr3:4441775 Cma09g01034 Cma-Chr9:5330654 3.48E-16 dispersed
Cma03g00404 Cma-Chr3:4441775 Cma11g01493 Cma-Chr11:9822021 1.39E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g796 . . . . . Bpe03g01028 . . . . Cma03g00404 . Car03g00353 . Sed14g0515 Cpe10g00910 . Bhi03g02043 Tan03g0913 Cmetu08g1944 . . . . Cla04g00768 Cam04g0797 Cec04g0921 Cco04g0972 Clacu04g0832 Cmu04g0825 Cre04g0882 . . Cone13ag1356 Cone19ag1352 Lsi01g01465 Csa04g01535 Chy08g00711 . Blo07g01168 . . Bda05g00954 . . . . . Cmo03g00417 . . . . . . . . . . . . . . . . . . . . . . . . Cme08g02442
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00344 CCT,ECH 33 188 PRT Gene Family AT1G80050 79.5 7.6e-66 247.3
Cma05g00376 CCT,ECH 33 191 PRT Gene Family AT1G80050 78.6 2.2e-65 245.7
Cma06g00768 . 30 180 PRT Gene Family AT1G80050 76.2 1.7e-62 236.1
Cma15g01143 . 30 180 PRT Gene Family AT1G80050 74.8 8.7e-62 233.8
Cma16g01064 . 30 180 PRT Gene Family AT1G80050 74.2 8.7e-62 233.8
Cma05g00145 CST 30 179 PRT Gene Family AT1G80050 70.7 7.1e-56 214.2
Cma12g00594 CST 104 253 PRT Gene Family AT1G80050 68.7 1.8e-54 209.5
Cma12g00344 CCT,ECH 1 148 PRT Gene Family AT5G11160 81.8 1.9e-64 242.7
Cma05g00376 CCT,ECH 1 148 PRT Gene Family AT5G11160 80.4 4.1e-62 235.0
Cma15g01143 . 8 145 PRT Gene Family AT5G11160 75.4 2.2e-55 212.6
Cma05g00145 CST 8 145 PRT Gene Family AT5G11160 71.7 2.0e-53 206.1
Cma12g00594 CST 82 219 PRT Gene Family AT5G11160 71.0 3.4e-53 205.3
Cma06g00768 . 8 145 PRT Gene Family AT5G11160 71.7 8.5e-52 200.7
Cma16g01064 . 8 145 PRT Gene Family AT5G11160 70.3 7.2e-51 197.6
Cma12g00594 CST 75 257 PRT Gene Family AT1G27450 82.5 1.1e-81 300.1
Cma05g00145 CST 1 183 PRT Gene Family AT1G27450 82.0 1.6e-80 296.2
Cma15g01143 . 7 180 PRT Gene Family AT1G27450 74.1 4.7e-72 268.1
Cma16g01064 . 1 180 PRT Gene Family AT1G27450 70.0 4.4e-70 261.5
Cma06g00768 . 7 180 PRT Gene Family AT1G27450 71.8 2.9e-69 258.8
Cma12g00344 CCT,ECH 11 183 PRT Gene Family AT1G27450 69.4 1.7e-66 249.6
Cma05g00376 CCT,ECH 11 183 PRT Gene Family AT1G27450 68.8 4.3e-65 245.0
Cma20g00802 CST 76 562 PRT Gene Family AT2G16570 83.4 8.2e-240 827.0
Cma02g00358 CST 68 554 PRT Gene Family AT2G16570 83.2 3.1e-239 825.1
Cma02g00358 CST 70 554 PRT Gene Family AT4G34740 85.0 1.2e-243 839.7
Cma20g00802 CST 82 562 PRT Gene Family AT4G34740 85.1 9.6e-241 830.1
Cma20g00802 CST 60 535 PRT Gene Family AT4G38880 72.7 2.5e-198 689.1
Cma02g00358 CST 26 527 PRT Gene Family AT4G38880 68.3 5.8e-195 677.9
Cma12g00594 CST 75 257 PRT Gene Family AT1G27450 82.5 1.1e-81 300.1
Cma05g00145 CST 1 183 PRT Gene Family AT1G27450 82.0 1.6e-80 296.2
Cma15g01143 . 7 180 PRT Gene Family AT1G27450 74.1 4.7e-72 268.1
Cma16g01064 . 1 180 PRT Gene Family AT1G27450 70.0 4.4e-70 261.5
Cma06g00768 . 7 180 PRT Gene Family AT1G27450 71.8 2.9e-69 258.8
Cma12g00344 CCT,ECH 11 183 PRT Gene Family AT1G27450 69.4 1.7e-66 249.6
Cma05g00376 CCT,ECH 11 183 PRT Gene Family AT1G27450 68.8 4.3e-65 245.0
Cma12g00344 CCT,ECH 33 188 PRT Gene Family AT1G80050 79.5 7.6e-66 247.3
Cma05g00376 CCT,ECH 33 191 PRT Gene Family AT1G80050 78.6 2.2e-65 245.7
Cma06g00768 . 30 180 PRT Gene Family AT1G80050 76.2 1.7e-62 236.1
Cma15g01143 . 30 180 PRT Gene Family AT1G80050 74.8 8.7e-62 233.8
Cma16g01064 . 30 180 PRT Gene Family AT1G80050 74.2 8.7e-62 233.8
Cma05g00145 CST 30 179 PRT Gene Family AT1G80050 70.7 7.1e-56 214.2
Cma12g00594 CST 104 253 PRT Gene Family AT1G80050 68.7 1.8e-54 209.5
Cma15g01143 . 5 97 PRT Gene Family AT4G22570 86.0 2.0e-43 172.2
Cma16g01064 . 5 97 PRT Gene Family AT4G22570 86.0 3.5e-43 171.4
Cma06g00768 . 5 104 PRT Gene Family AT4G22570 78.0 6.6e-42 167.2
Cma05g00145 CST 5 97 PRT Gene Family AT4G22570 80.6 4.0e-39 157.9
Cma12g00594 CST 81 171 PRT Gene Family AT4G22570 81.3 1.5e-38 156.0
Cma12g00344 CCT,ECH 11 100 PRT Gene Family AT4G22570 78.9 2.9e-37 151.8
Cma15g01143 . 1 96 PRT Gene Family AT4G12440 83.3 2.5e-40 161.8
Cma06g00768 . 1 96 PRT Gene Family AT4G12440 81.3 1.3e-39 159.5
Cma16g01064 . 1 96 PRT Gene Family AT4G12440 81.3 1.6e-39 159.1
Cma12g00594 CST 75 170 PRT Gene Family AT4G12440 78.1 2.0e-37 152.1
Cma05g00145 CST 1 96 PRT Gene Family AT4G12440 78.1 3.4e-37 151.4
Cma12g00344 CCT,ECH 4 99 PRT Gene Family AT4G12440 78.1 4.5e-37 151.0
Cma12g00344 CCT,ECH 1 148 PRT Gene Family AT5G11160 81.8 1.9e-64 242.7
Cma05g00376 CCT,ECH 1 148 PRT Gene Family AT5G11160 80.4 4.1e-62 235.0
Cma15g01143 . 8 145 PRT Gene Family AT5G11160 75.4 2.2e-55 212.6
Cma05g00145 CST 8 145 PRT Gene Family AT5G11160 71.7 2.0e-53 206.1
Cma12g00594 CST 82 219 PRT Gene Family AT5G11160 71.0 3.4e-53 205.3
Cma06g00768 . 8 145 PRT Gene Family AT5G11160 71.7 8.5e-52 200.7
Cma16g01064 . 8 145 PRT Gene Family AT5G11160 70.3 7.2e-51 197.6
Cma04g02471 . 1 184 PRT Gene Family AT1G71750 65.1 1.2e-68 256.9
Cma09g01034 . 60 512 PRT Gene Family AT1G55810 85.2 2.9e-224 775.0
Cma01g00388 . 19 482 PRT Gene Family AT1G55810 73.8 1.1e-199 693.3
Cma11g01493 . 550 964 PRT Gene Family AT1G55810 79.2 5.4e-194 674.5
Cma09g01034 . 109 511 PRT Gene Family AT3G27440 76.9 1.6e-184 642.9
Cma01g00388 . 80 482 PRT Gene Family AT3G27440 74.4 1.9e-177 619.4
Cma11g01493 . 565 964 PRT Gene Family AT3G27440 74.7 2.5e-177 619.0
Cma01g00388 . 1 482 PRT Gene Family AT3G27190 85.7 2.1e-244 842.0
Cma11g01493 . 550 964 PRT Gene Family AT3G27190 88.5 3.8e-222 768.1
Cma09g01034 . 47 511 PRT Gene Family AT3G27190 72.7 4.7e-204 708.0
Cma03g00404 . 4 286 PRT Gene Family AT3G53900 67.7 6.0e-109 391.3
Cma09g01034 . 45 512 PRT Gene Family AT4G26510 83.2 2.8e-230 795.0
Cma01g00388 . 11 482 PRT Gene Family AT4G26510 75.0 3.3e-210 728.4
Cma11g01493 . 550 964 PRT Gene Family AT4G26510 81.3 3.0e-203 705.3
Cma01g00388 . 1 482 PRT Gene Family AT5G40870 85.7 4.0e-243 837.8
Cma11g01493 . 550 964 PRT Gene Family AT5G40870 90.4 1.7e-225 779.2
Cma09g01034 . 88 514 PRT Gene Family AT5G40870 78.7 1.1e-203 706.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005664 1 4 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00404 Cma_Chr03 FPKM 9.112336 9.506355 27.235516 26.2668 63.704697 53.088398 61.221134 23.933666 25.734045 26.355749