Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00415 ATGGCATCCTCTGTTTTGTTCATCACAATTTTCTCTGCTCTAATTTTTCTGTCCACCCAAACGCTGTCTCAGCACACCCAACTGTTCTATCCTGGATTCAATGCATCCACCAACTTGACTTTGAAGCAATATGCAGGAATCGAGAACAATGGAGTTTTGAGACTCACCAATTATTCCCCTGATATCATCGGCCAGGCCTTTTACGCCACTCCAATTCAGTTCAAAAACTCCTCCACCGCCGCACACGGTGGTAGTAGCAACGGCAAAGTTTTTTCTTTCTCCACCTGTTTTGCCTTCTGCATCATCCCTGAGGACGATAACTATGTCGGCCATGGCTTCACTTTCGCCATCGTACCTTCTAAAAATCTTAGTGCTCTTTCACAGACGTATCTCGGCCTCTTCAACAGAAAACCCTCAACCCATATCTTTGCGGTTGAATTCGATACCATCCAGACTGTTGAGGTTAAAGACATCGACAATAATCATGTGGGTATCGATTTAAATAGCTTGATTTCCAATGTCTCTAAACATGCTGCTTATTTTGATGATTCTGGTCAGCTTTATAATCTGACTCTCAAAAGTGGGAAGCCTGTTAAAGCTTGGATTGATTATGATTCTCGTGAATTCACTCTCAATGTTACGATTTCCCCTTTTTATTCAAAACCCAGAAAGCCACTTCTGTCGTACAGAGTGGATCTTTCGTCAATTTTTAATGAAAATATGTACATTGGATTTACTGCTTCAACGGGTATACTGGCTCATAGCTCGCATTATATTTTGGGGTGGAGTTTCGCCATTAATGGCAAAGCTCGAGATCTTGAGCTCTCTTCGCTTCCATTACCCAAACAGAGGAAAACAGGGGCGAAAATCAGTCTCTCTGTTTATTTGTCTGTAACAGCGGCGAGTTTTTTTGCGATCTCTGTTTTCGCTTTTGGTATTCATTTCTTAAGGAAGCATAAGAAATCTAATGAAATCGAGCTGTGGGAGCTTCAAATGGGACCCCATCGTTATTCCTACAGAGAACTCAAAAAGGGTACTAGAAATTTCAGCGAGAAGGAGATTCTTGGGTTTGGTGGATCTGGGAAAGTATACAGAGGAACCCTTCCGATTTCGAAAACAGAAATCGCGGTGAAGCGAATTTTTCATAATTCGAAACAGGGTCTCCGGGAATTTGTGACGGAAATCGCTACAATCGGAAGGCTCCGTCACCGGAATCTGGTTCAGTTGCTCGGGTGGTGTCGGCGGGGGCAGGATCTGCTTATTGTTTACGAATATATGGCGAATGGGAGCTTGGATAACTATCTATTCGACGATCCGAAAACAATTCTGAATTGGGAACAGAGATCCAAAGTCATTAAAGGGGTTGCCTCTGCTCTGCTTTATCTTCACGAAGGGTACAAACAGGTGGTGATACACAGAGACGTGAAGGCGAGCAATGTGTTGTTAGACGGCGAATTGAACGGGAGATTGGGGGATTTCGGGCTTGCGAAGGTGTACGATCATGGGTCTGTTCCGGTTACGACTCGAGTCGTCGGAACTTTGGGTTATTTGGCACCGGAGCTGCCAAGAACAGGGAAATCAACGACGAGCTCCGACGTATACGCGTTTGGGGCTCTGATGTTGGAAGTAGTTTGTGGGCGGCGGCCAGTGGAGGTGAAGGCGTTGCCAGAGGAGATGACGTTAGTGGATTGGGTTTGGGACAAATACAGAGAAGGGCGGCTTTTGGCCGTCGTCGATCCGAAGCTCCGGGGAGACTACGACGAGGTTGAGGCGGCAATGGTATTAAAATTGGGGGTTATGTGTTCGAATAATGAACCGAAGCAACGGCCGAGTATGAGGCAGATTGTGCAGTGTTTGAACGGAGAAATTGGCGTCGCCGACGAGTGGAAGGCGCCCGACGGGGGGAGCAACGGTGGGGCGGTGGGGGATTTTGTCGTGTCTTTTACGTCTTTATCCATTACCTGA 1965 46.26 MASSVLFITIFSALIFLSTQTLSQHTQLFYPGFNASTNLTLKQYAGIENNGVLRLTNYSPDIIGQAFYATPIQFKNSSTAAHGGSSNGKVFSFSTCFAFCIIPEDDNYVGHGFTFAIVPSKNLSALSQTYLGLFNRKPSTHIFAVEFDTIQTVEVKDIDNNHVGIDLNSLISNVSKHAAYFDDSGQLYNLTLKSGKPVKAWIDYDSREFTLNVTISPFYSKPRKPLLSYRVDLSSIFNENMYIGFTASTGILAHSSHYILGWSFAINGKARDLELSSLPLPKQRKTGAKISLSVYLSVTAASFFAISVFAFGIHFLRKHKKSNEIELWELQMGPHRYSYRELKKGTRNFSEKEILGFGGSGKVYRGTLPISKTEIAVKRIFHNSKQGLREFVTEIATIGRLRHRNLVQLLGWCRRGQDLLIVYEYMANGSLDNYLFDDPKTILNWEQRSKVIKGVASALLYLHEGYKQVVIHRDVKASNVLLDGELNGRLGDFGLAKVYDHGSVPVTTRVVGTLGYLAPELPRTGKSTTSSDVYAFGALMLEVVCGRRPVEVKALPEEMTLVDWVWDKYREGRLLAVVDPKLRGDYDEVEAAMVLKLGVMCSNNEPKQRPSMRQIVQCLNGEIGVADEWKAPDGGSNGGAVGDFVVSFTSLSIT 654
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 4475133 4477097 - CmaCh03G004150.1 Cma03g00415 289986
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00415 654 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 281 IPR013320 -
Cma03g00415 654 SUPERFAMILY Protein kinase-like (PK-like) 323 619 IPR011009 -
Cma03g00415 654 CDD STKc_IRAK 355 621 - -
Cma03g00415 654 PANTHER - 10 631 - -
Cma03g00415 654 Pfam Protein kinase domain 349 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00415 654 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 10 631 - -
Cma03g00415 654 Gene3D - 25 274 - -
Cma03g00415 654 SMART serkin_6 349 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00415 654 ProSitePatterns Protein kinases ATP-binding region signature. 355 378 IPR017441 GO:0005524
Cma03g00415 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Cma03g00415 654 Pfam Legume lectin domain 27 278 IPR001220 GO:0030246
Cma03g00415 654 Gene3D Transferase(Phosphotransferase) domain 1 426 630 - -
Cma03g00415 654 CDD lectin_legume_LecRK_Arcelin_ConA 26 268 IPR001220 GO:0030246
Cma03g00415 654 ProSiteProfiles Protein kinase domain profile. 349 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00415 654 Gene3D Phosphorylase Kinase; domain 1 334 425 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma03g00415 Cma14g00127 CCT
Cma03g00415 Cma07g01005 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00415 Cma-Chr3:4475133 Cma14g00127 Cma-Chr14:535702 0 dispersed
Cma10g00096 Cma-Chr10:388019 Cma03g00415 Cma-Chr3:4475133 1.14E-175 transposed
Cma14g00124 Cma-Chr14:532341 Cma03g00415 Cma-Chr3:4475133 0 wgd
Cma03g00415 Cma-Chr3:4475133 Cma06g00283 Cma-Chr6:1371766 2.68E-40 wgd
Cma03g00415 Cma-Chr3:4475133 Cma07g01005 Cma-Chr7:5205608 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68405 PF00069 Pkinase 4.10E-45 CL0016 Cma PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00415 - - bhj:120073983 1026.93