Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00422 ATGGCTTCTCTTTCCCTCCTCTGCTGCATTTCCATTGCTTCTTTCTCCTCCCTCTTCCTCCTCTCTCACGCTAGAATTCCCGGCGTCTACTCCGCCGGTGCCTGGCAGGACGCCCACGCCACATTCTACGGCGGCAGTGATGCCTCCGGAACCATGGGTGGTTCTTGTGGGTATGGGAATCTCTACAGCCAGGGGTATGGCGTTAACACTGCCGCTCTGAGTACTGCTCTCTACAACAATGGACTCAGATGTGGTGCTTGCTTTGAGATCAAGTGCGCTAACGATCCCCAATGGTGCCATCCCGGTAGCCCTTCTATATTCATTACGGCTACCAATTTTTGTCCCCCCAATTACGCCCTTCCTAGTGACAATGGCGGCTGGTGTAACCCTCCTCGCACCCATTTCGATCTCGCTATGCCTATGTTCCTAAAAATCGCCGAGTACCGCGCCGGAATCGTTCCCGTCTCTTACCGCCGGGTGCCATGTAGGAAACAAGGGGGAATCAGGTTCACAATCAACGGTTTCCGTTACTTTAACTTGGTATTGATCACCAACGTCGCGGGTGCAGGGAATATCGTGAGGGTTAGCGTGAAAGGATCAAACACGGGTTGGATGAGCATGAGCCATAACTGGGGGCAAAATTGGCAATCCAACGTCGTTTTAGTGGGCCAGTCCCTGTCCTTCCGCGTCACCGGCAGTGACCGTCGTACCTCAACTTCATTGAACGTGGTGCCTTCTAATTGGCAGTTCGGTCAGACATTCACGGGAAAGAATTTCCGCGTTTGA 786 53.18 MASLSLLCCISIASFSSLFLLSHARIPGVYSAGAWQDAHATFYGGSDASGTMGGSCGYGNLYSQGYGVNTAALSTALYNNGLRCGACFEIKCANDPQWCHPGSPSIFITATNFCPPNYALPSDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGNIVRVSVKGSNTGWMSMSHNWGQNWQSNVVLVGQSLSFRVTGSDRRTSTSLNVVPSNWQFGQTFTGKNFRV 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4515929 4517701 + CmaCh03G004220.1 Cma03g00422 289993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00422 261 Pfam Lytic transglycolase 70 157 IPR009009 -
Cma03g00422 261 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
Cma03g00422 261 Gene3D - 167 259 IPR036749 -
Cma03g00422 261 SMART dpbb_1 70 157 IPR007112 -
Cma03g00422 261 Gene3D - 22 163 IPR036908 -
Cma03g00422 261 PANTHER EXPANSIN-A15 7 260 IPR002963 GO:0009664
Cma03g00422 261 SUPERFAMILY Barwin-like endoglucanases 34 185 IPR036908 -
Cma03g00422 261 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Cma03g00422 261 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Cma03g00422 261 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Cma03g00422 261 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Cma03g00422 261 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Cma03g00422 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Cma03g00422 261 Pfam Expansin C-terminal domain 168 245 IPR007117 -
Cma03g00422 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 256 IPR007117 -
Cma03g00422 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 167 IPR007112 -
Cma03g00422 261 PRINTS Expansin signature 65 79 IPR002963 GO:0009664
Cma03g00422 261 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Cma03g00422 261 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Cma03g00422 261 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Cma03g00422 261 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Cma03g00422 261 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Cma03g00422 261 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Cma03g00422 261 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Cma03g00422 261 PRINTS Expansin signature 242 258 IPR002963 GO:0009664
Cma03g00422 261 PANTHER EXPANSIN 7 260 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00422 Cma07g00999 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00609 Cma-Chr1:3176629 Cma03g00422 Cma-Chr3:4515929 2.64E-163 dispersed
Cma03g00422 Cma-Chr3:4515929 Cma13g00123 Cma-Chr13:843427 1.55E-161 dispersed
Cma14g01128 Cma-Chr14:8566281 Cma03g00422 Cma-Chr3:4515929 8.03E-98 transposed
Cma02g00797 Cma-Chr2:4725802 Cma03g00422 Cma-Chr3:4515929 3.48E-168 wgd
Cma20g00396 Cma-Chr20:1904421 Cma03g00422 Cma-Chr3:4515929 2.45E-168 wgd
Cma03g00422 Cma-Chr3:4515929 Cma04g00211 Cma-Chr4:1005461 2.88E-166 wgd
Cma03g00422 Cma-Chr3:4515929 Cma04g01180 Cma-Chr4:6015443 1.89E-140 wgd
Cma03g00422 Cma-Chr3:4515929 Cma04g02655 Cma-Chr4:18055290 8.20E-138 wgd
Cma03g00422 Cma-Chr3:4515929 Cma07g00999 Cma-Chr7:5154276 3.26E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00422 - - csv:101212872 493.812