Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00425 ATGGGTAATCATATTGGGAAGATTGGCCACTGCTTCGCCGGCGCCGGCGATATTTCCAGTCGTTATGGTCCTGCCGACATAATCTCCGACCCCCACGACGGCGGTTTTGGCCACTCCTTTTACTATCTCCCACCCGACCCACAAACCCTCTCCTCCTTCAAAGCTTTCCCCGAAGACTACATCTCTCCAGCGACCATTTTCCGGTCGATTTCCGGCGCCTCTGTAAGCGCCAACGTCTCAACGCCGCTGTCCACGTCTCTGGTCGATCTATATCCTTATAGCACCACGTTTGATCGGGCCGCTGCTTTCGATTGCTCGAATTCCTTTGCCTCTGTGCCGTTACAGCCGGTGCCACGCCACTCGATGTCGGGAAATTTCGGTGGAAACCCTTCTTCGGGTCCAATGGAGAGAGGGTTCTTATCCGGACCCTTGGCCGCCCGGAGCATCGAATCGTGCCCGATAGATCGAGTGGTTTACTCCGGCTCGATTGAGAAGGGCGGCGGACCTGAGAAATTGCAGAGAAGCGTCTCTAACGGCGGCGTTGGAGATAGACAACCGAAATCGAAAAGAAGAAGTCTCATTCGGATTCTGAAGAGAGCCATATCCAAAACCATTTCTCGAAACCAGAAGGCTGCGAGTTCATACAAACATGAGAATGCAGCTCAGACTCAAAGCAGTGTTCATTTGAGCAGCCACGCCAGTTTGGCGCAGGAAGACGATGGCGATTACTTTGTCGGCGGTCAGGGCGTACAGTGGGCACAGGGGAAGGCCGGCGAGGATAGAGTTCACGTGGTGATATTGGAGGAAAATGGTTGGGTTTTTGTCGGAGTTTATGATGGATTCAACGGGCCTGATGCTCCTGATTACTTACTCGCTAATCTCTACACTGCCGTTCTCAAAGAGCTCAAGGGTTTGATATGGAATGATAAGTTGGATTCAACTGCAACCACGTCTTCCATGAACTCATCCAACTCTGCTTTAATTGAGGAAGACGATCATGGAACAACCCACATAAAAACTCAGGCTAATGTTCATCAACCTACAGTGAACTTTTCGGCAGAAAATAGGACGAGACAGCTGATGAAGAAGGGCGATCAGGATCCAGAGAATTGGAAATGGGAAAGGGAAAGGGAAAGCATAGGATTAGATCACCACAACATATGGGATGAATCAACAACAATCAATCATTCTGAGGTGTTGAATGCTCTATCTGAAGCATTGAAAAAAACAGAGGAATCATATCTGCAGAATGCAGACAAGATGGCCACAAGAAATCCTGAGCTAGCTCTAATGGGTTCTTGTGTTTTGGTTATGTTAATGAGAGGAGAAGATGTGTACCTGATGAATGTAGGAGACAGCCGTGCAATTGTAGCGCAGCAACTCGAACCATACAGAGACTTGGAGAGAATCAATGAAGGAACACTACGGGTATTAGAATCCCCTGAAAGATTAACAGCCTTAGCTTCCCATCAGCTTACGATGGACCACAGCACGTACACAGAGGAGGAAGTTCAGAGGATCAAGAATGCTCATTCTGACGACCCTTCAGCAATTATGAATGACAGGGTGAAAGGTTATTTGAAAATCACACGGGCGTTTGGTGCTGGCTTTCTGAAACAGCCAAAGTGGAATGACGCATTGCTAGAGATGTTCAGAATAGACTATGTGGGAAATTCACCTTACATCACCTGTGATCCAACTCTGTGCCATTATAAACTCAGCCCAACTGACAGATTCTTGATATTGTCGTCTGATGGACTCTATCAATACTTTACAAATGAAGAAGCTGTTGCTCAAGTAGAGTCCTTCATTGCTTCTTTCCCTGAAGGAGATCCTGCTCAAAATCTCATTGAAGAAGTATTGTTCCGAGCAGCTAAAAAATATGGAATGGCCTTCCATGAGCTGCTTGATATCCCACAAGGGGAGCGGCGGAAGTACCACGACGACGTTTCAGTGATCATCATTTCATTAGAAGGAAGAATTTGGCATTGGTTGATGTAA 2001 47.38 MGNHIGKIGHCFAGAGDISSRYGPADIISDPHDGGFGHSFYYLPPDPQTLSSFKAFPEDYISPATIFRSISGASVSANVSTPLSTSLVDLYPYSTTFDRAAAFDCSNSFASVPLQPVPRHSMSGNFGGNPSSGPMERGFLSGPLAARSIESCPIDRVVYSGSIEKGGGPEKLQRSVSNGGVGDRQPKSKRRSLIRILKRAISKTISRNQKAASSYKHENAAQTQSSVHLSSHASLAQEDDGDYFVGGQGVQWAQGKAGEDRVHVVILEENGWVFVGVYDGFNGPDAPDYLLANLYTAVLKELKGLIWNDKLDSTATTSSMNSSNSALIEEDDHGTTHIKTQANVHQPTVNFSAENRTRQLMKKGDQDPENWKWERERESIGLDHHNIWDESTTINHSEVLNALSEALKKTEESYLQNADKMATRNPELALMGSCVLVMLMRGEDVYLMNVGDSRAIVAQQLEPYRDLERINEGTLRVLESPERLTALASHQLTMDHSTYTEEEVQRIKNAHSDDPSAIMNDRVKGYLKITRAFGAGFLKQPKWNDALLEMFRIDYVGNSPYITCDPTLCHYKLSPTDRFLILSSDGLYQYFTNEEAVAQVESFIASFPEGDPAQNLIEEVLFRAAKKYGMAFHELLDIPQGERRKYHDDVSVIIISLEGRIWHWLM 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4535391 4538377 + CmaCh03G004250.1 Cma03g00425 289996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00425 666 MobiDBLite consensus disorder prediction 208 232 - -
Cma03g00425 666 PANTHER PROTEIN PHOSPHATASE 2C 20 662 IPR015655 GO:0004722|GO:0006470
Cma03g00425 666 Gene3D - 191 661 IPR036457 -
Cma03g00425 666 SUPERFAMILY PP2C-like 255 658 IPR036457 -
Cma03g00425 666 SMART PP2C_4 243 655 IPR001932 -
Cma03g00425 666 CDD PP2Cc 256 657 IPR001932 -
Cma03g00425 666 Pfam Protein phosphatase 2C 393 629 IPR001932 -
Cma03g00425 666 ProSiteProfiles PPM-type phosphatase domain profile. 244 657 IPR001932 -
Cma03g00425 666 PANTHER PHOSPHATASE 2C, PUTATIVE-RELATED 20 662 - -
Cma03g00425 666 MobiDBLite consensus disorder prediction 163 189 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00425 Cma07g00996 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00425 Cma-Chr3:4535391 Cma06g00846 Cma-Chr6:4703882 5.73E-39 dispersed
Cma02g00802 Cma-Chr2:4762278 Cma03g00425 Cma-Chr3:4535391 0 wgd
Cma20g00405 Cma-Chr20:1941128 Cma03g00425 Cma-Chr3:4535391 0 wgd
Cma03g00425 Cma-Chr3:4535391 Cma07g00996 Cma-Chr7:5127919 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00425 - - bhj:120069881 1127.46