Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00427 ATGGCTGAGAACGAGGACATCCAGCCTCTTGTCTGTGATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCTGGGGATGATGCTCCAAGGGCTGTCTTCCCTAGCATTGTTGGTCGCCCTCGCCATACAGGTGTTATGGTTGGAATGGGGCAGAAAGATGCTTATGTTGGGGACGAGGCTCAGTCCAAGCGTGGTATTTTGACTCTCAAATACCCTATTGAGCACGGAATTGTCAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACTTTCTACAATGAACTTCGTGTCGCTCCAGAAGAACATCCAATTCTTCTAACTGAGGCACCACTCAATCCCAAAGCTAACCGTGAGAAGATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTACGTAGCCATTCAAGCTGTTCTTTCCCTTTATGCCAGTGGTCGTACAACTGGCATTGTGCTAGATTCTGGAGATGGTGTCAGTCACACAGTCCCCATCTACGAGGGATATGCCCTTCCGCATGCTATCCTACGTATTGATCTTGCTGGCCGTGACCTGACTGACGCCCTCATGAAAATTTTGACTGAGCGTGGTTATTCATTCACCACTTCAGCTGAGCGTGAAATTGTGAGAGATATGAAGGAAAAGTTGGCCTACATTGCCCTTGACTTTGAGCAAGAATTAGAAACCTCTAAGACCAGCTCTTCAGTTGAGAAGAGTTATGAATTGCCAGATGGTCAGGTGATTACCATTGGCGCTGAGCGTTTCCGATGCCCGGAAGTCCTTTTCCAGCCATCCATGATCGGAATGGAAGCTGCTGGTATTCATGAGACAACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGTGGTGGTTCAACCATGTTCCCTGGAATTGCTGATAGAATGAGCAAGGAGATCACAGCCTTGGCCCCGAGCAGCATGAAGATTAAGGTGGTTGCGCCGCCTGAAAGGAAGTACAGTGTGTGGATTGGAGGTTCCATCTTGGCGTCCTTGAGCACTTTCCAGCAGATGTGGATTGCTAAGGCTGAGTATGATGAGTCTGGCCCCTCAATTCCGCCATTAAGAGTTTGTGGGTGGTTCCTATCTCCATTCTCGTTTACCGCATTGTTTCCGATCCGAACATGGACGAGATATTTCATGTACCTCAAGCTCAGAAATGCTGCAGTGGGAACTTCCGAAGTTGGGACCCGAAGATTTCAAATCCTCCTGGACTCATCGCTAGGACTTTTGGCAGAACTTGGTGGTAATGATAATACATGGAACCTAAATCTTCTGAAGTTCTGCGTTGGAATGTATTTGTATTGGATGCAAGTTGCAACACACGCACGCACGCACAATTTGGGGTGGAAGACAGGCAAGAGGAAGCTGAACAACTCTACACTCTCTGTGTTGAAGGTTGAAGAAGAAGAATCAATGAAATAA 1482 46.76 MAENEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRIDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDFEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIPPLRVCGWFLSPFSFTALFPIRTWTRYFMYLKLRNAAVGTSEVGTRRFQILLDSSLGLLAELGGNDNTWNLNLLKFCVGMYLYWMQVATHARTHNLGWKTGKRKLNNSTLSVLKVEEEESMK 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4537903 4542870 - CmaCh03G004270.1 Cma03g00427 289998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00427 493 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cma03g00427 493 SMART actin_3 7 378 IPR004000 -
Cma03g00427 493 Pfam Actin 5 371 IPR004000 -
Cma03g00427 493 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cma03g00427 493 Gene3D Actin; Chain A, domain 4 182 273 - -
Cma03g00427 493 SUPERFAMILY Actin-like ATPase domain 149 371 IPR043129 -
Cma03g00427 493 PANTHER ACTIN 1 374 IPR004000 -
Cma03g00427 493 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cma03g00427 493 Gene3D - 140 340 - -
Cma03g00427 493 Gene3D - 10 371 - -
Cma03g00427 493 PANTHER - 1 374 - -
Cma03g00427 493 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cma03g00427 493 PRINTS Actin signature 51 62 IPR004000 -
Cma03g00427 493 PRINTS Actin signature 238 254 IPR004000 -
Cma03g00427 493 PRINTS Actin signature 117 130 IPR004000 -
Cma03g00427 493 PRINTS Actin signature 142 161 IPR004000 -
Cma03g00427 493 PRINTS Actin signature 28 37 IPR004000 -
Cma03g00427 493 PRINTS Actin signature 63 85 IPR004000 -
Cma03g00427 493 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00427 Cma-Chr3:4537903 Cma06g00102 Cma-Chr6:551928 0 dispersed
Cma15g00386 Cma-Chr15:1755346 Cma03g00427 Cma-Chr3:4537903 0 wgd
Cma02g00806 Cma-Chr2:4772408 Cma03g00427 Cma-Chr3:4537903 0 wgd
Cma20g00406 Cma-Chr20:1944722 Cma03g00427 Cma-Chr3:4537903 0 wgd
Cma03g00427 Cma-Chr3:4537903 Cma07g00992 Cma-Chr7:5110022 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00427 K10355 - csv:101214246 731.095