Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma03g00431 | ATGGTGTTTCCCTCTCACCCATCTAATTATCTTGATCCAACAACCCATCAATGGCAACACCAAACCCCAACCCATCAATCTGGGACCAGTTTTCAGCTGGTGTCGCCGCCACGGGCGCCGCCACAAGTCCGCCCCGAGTCGATGGTGGATCGTGCCCGAATGGCGAACCTGCCGGTGCCGGAGACAGCCCTGAAATGTCCAAGATGTGAATCAACTAACACAAAGTTTTGTTATTTCAACAACTATAGCCTCTCTCAGCCACGCCACTTTTGCAAGACCTGCCGTCGCTACTGGACCCGAGGTGGCGCCCTTAGAAGTGTCCCCGTCGGCGGCGGCTACCGCCGGAATAATAAAAGAACCAAAAGTACCTCTAAATCTCCGGTTAACTCACAATGCCAACCGACTACTACTACGGAGCTTTCAGGAGGAGAAACAATGAGATTAAATTACATACAAAATGAAGGAGTTATGAATTCAACTCATCCCCCCATTGGGATAACAAGCTTCTTAGGGTTTGATCAAATTCAATGGCGGCCACAGCTTCAGCTACACCGAGCGCAGCCAGCTCGGTTGCTCGGAAACGGTGGTGGTGGCGACGATGCATCGTCGAGCTATAGCATTGTCGGGAAGATGGAAGCCGAAGATGGAGAACATCATGTGAATGTGGGAAAGCCATTTTGGGATCGCCATTATTGGAATGCTTTTAATCCTTCATCTTCTTCTTCCCATTCACAAGTATGA | 741 | 49.93 | MVFPSHPSNYLDPTTHQWQHQTPTHQSGTSFQLVSPPRAPPQVRPESMVDRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKRTKSTSKSPVNSQCQPTTTTELSGGETMRLNYIQNEGVMNSTHPPIGITSFLGFDQIQWRPQLQLHRAQPARLLGNGGGGDDASSSYSIVGKMEAEDGEHHVNVGKPFWDRHYWNAFNPSSSSSHSQV | 246 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 4562700 | 4563921 | - | CmaCh03G004310.1 | Cma03g00431 | 290002 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma03g00431 | 246 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
| Cma03g00431 | 246 | PANTHER | DOF DOMAIN ZINC FINGER PROTEIN | 15 | 157 | - | - | |
| Cma03g00431 | 246 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 15 | 157 | IPR045174 | GO:0003700|GO:0006355 | |
| Cma03g00431 | 246 | MobiDBLite | consensus disorder prediction | 8 | 36 | - | - | |
| Cma03g00431 | 246 | Pfam | Dof domain, zinc finger | 63 | 118 | IPR003851 | GO:0003677|GO:0006355 | |
| Cma03g00431 | 246 | ProSitePatterns | Zinc finger Dof-type signature. | 66 | 102 | IPR003851 | GO:0003677|GO:0006355 | |
| Cma03g00431 | 246 | MobiDBLite | consensus disorder prediction | 122 | 140 | - | - | |
| Cma03g00431 | 246 | MobiDBLite | consensus disorder prediction | 109 | 140 | - | - | |
| Cma03g00431 | 246 | ProSiteProfiles | Zinc finger Dof-type profile. | 64 | 118 | IPR003851 | GO:0003677|GO:0006355 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma03g00431 | Cma06g00304 | CCT | |
| Cma03g00431 | Cma14g00157 | CCT | |
| Cma03g00431 | Cma06g00304 | ECH | |
| Cma03g00431 | Cma14g00157 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma03g00431 | Cma-Chr3:4562700 | Cma13g00133 | Cma-Chr13:909757 | 1.44E-44 | dispersed | |
| Cma14g00157 | Cma-Chr14:642222 | Cma03g00431 | Cma-Chr3:4562700 | 5.69E-50 | wgd | |
| Cma15g00398 | Cma-Chr15:1778177 | Cma03g00431 | Cma-Chr3:4562700 | 1.87E-44 | wgd | |
| Cma20g00412 | Cma-Chr20:1971141 | Cma03g00431 | Cma-Chr3:4562700 | 1.52E-42 | wgd | |
| Cma03g00431 | Cma-Chr3:4562700 | Cma04g00219 | Cma-Chr4:1060358 | 3.02E-41 | wgd | |
| Cma03g00431 | Cma-Chr3:4562700 | Cma04g01188 | Cma-Chr4:6067895 | 1.02E-43 | wgd | |
| Cma03g00431 | Cma-Chr3:4562700 | Cma04g02639 | Cma-Chr4:17995394 | 1.59E-40 | wgd | |
| Cma03g00431 | Cma-Chr3:4562700 | Cma06g00304 | Cma-Chr6:1443954 | 1.21E-42 | wgd | |
| Cma03g00431 | Cma-Chr3:4562700 | Cma07g00977 | Cma-Chr7:4730534 | 1.09E-70 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34610 | PF02701 | zf-Dof | 3.10E-31 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma03g00431 | - | - | cmos:111453164 | 468.003 |