Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00436 ATGAGCGTGAACATAACCTCCATCAAAATCGCCTCAAATGGCGTCTGGCAAGGCGACAACCCCCTGCACTTCGCTTTCCCTCTCTTAATCCTTCAGTCCGTCCTCATTCTCCTCCTCTCCCGCCTACTCGCTCTCCTCCTCAAACCTCTCCGGCAGCCCAAAGTCATCGCCGAAATCGTCGGTGGGATTCTTCTGGGTCCGTCGGCGCTCGGCCGAAACAAAGCTTATTTGCACCGGATTTTCCCTCAATGGAGCACTCCGATTCTCGAATCCGTTGCCAGCATCGGTTTATTGTTCTTCCTGTTCCTCGTCGGACTCGAACTCGATTTGTCCTCCATTCGTCGGAGCGGTCGGAGGGCTTTCGGAATCGCCCTCGCTGGAATCTCTGTCCCCTTCCTCTCCGGTATCGGAGTAGCCTTCATCCTCCGCAAAACCGTAGACGGCGTTGACAAAGTCGGCTATGGTCAATTCATTGTATTCATGGGTGTCGCCTTGTCCATCACTGCCTTCCCTGTTCTTGCTCGCATTTTAGCTGAGCTTAAGCTCCTCACTACCCAAGTCGGCGAAACCGCCATGGCTGCTGCTGCGTTCAACGACATCGCCGCTTGGATTCTCCTCGCACTTGCGGTGGCTCTCGCCGGTAACGGCGAAGGTGGGGCCCAAAAGAGTCCGTTGGTGTCCGTGTGGGTCCTACTTTCCGGAGGTGGGTATGTCGTTTTCATGATGGTGGTTATTCGTCCCGGAATGAAATGGGTTGTGCGGCGGTGTTCGTACGAGCACGATGCTCTGGGCGACGCGTATATCTGTTTGACGTTAGTGGGGGTGTTGGTGTCGGGATTCGTGACGGATTTGATCGGAATTCATTCGATTTTTGGGGGTTTTGTGTTTGGATTAACGATTCCGAAAGGGGGAAGGTTTGCGGAGAGATTGATTGAGAGGATTGAAGATTTTGTGTCGGGTCTTCTTCTTCCTCTGTATTTTGCTTCCAGTGGATTGAAGACGGACGTGGCTAAGATTAAAGGGGGCAGAGCGTGGGGGCTGCTGGCGTTAGTTATCTCCACTGCGTGCGCCGGTAAGATTCTGGCCACATTTGTGGCGGCGATGGCGTTTCTGATCCCGGCGAGAGAGGCGTTGGCGTTGGGGCTTCTTATGAACACTAAAGGCCTGGTTGAATTGATTGTTCTCAATATTGGCAAAGAGAAAAAGGTTTTGAACGACGAAATCTTCGCCATTTTAGTGTTAATGGCACTGTTCACAACATTCATCACTACCCCCACCGTGATGGCGGTTTACAAGCCAGCACGCGGCGGCTCCACCTCGCGAACCCATCGGAAACTCCATGACCTCTCGGCCGACGACGAGCTTCGGATCCTAGCCTGTCTCCACAGCTCTGGCAATGTGCCGTCCCTCATGGGTCTGACCGAAGCAACTCGCAGCACAAAAAACTCGTCACTCAAACTCTTCGTGATGCACCTGGTCGAGCTCACCGAGCGGTCTTCGTCCATCATGATGGTCCAACGCGCCCGCAAAAACGGCTTTCCTTTCTTCGCCAGGTTCCGGAAGGCCGGTGAGTGGCGCGACCAGATGGCTGCTGCCTTTCAGGCCTACAGCCAACTGGGTCGGGTTAAGGTCCGCCCCACTACCGCTGTCTCTTCCTTGGCCACTATGCATGAGGATATCTGCCACGTGGCGAACGAGAAGAGGGTCACGATGATCATCTTGCCATTCCATCGGAATTGGAGGGTATTTGACGGCGACGGCAAGGAAGAGGAGGAGAATGTGGGCCATGGCTGGAGAGTTGTGAACCAACGGGTTCTGAAGAATGCGCCTTGCTCCGTGGCGGTTCTTGTGGACCGTGGATTTGGGGCCAATACGGTTCATACGTTTGGGCCTGGGCCCATTGTTGGTGTGGCCCAAAGGGTTTGTATCGTGTTTTTTGGTGGGCCCGATGACCGGGAGGCGCTGGAGTTGGGTGGCCTGATGGCGGAGCATCCGGCGGTGAAGGTCACGGTGGTAAGGTTCCGGCCGTCGCCATCGAATGGGTTTGAGGGTAGCAACGTCATTTTGCGCCCCATGCATTCCAAATCTGGCGACAACCATTATAGCTTCTCCACAGCTCCAATCAACCGGGAAAAAGAAAAGGAGCTAGATGATGTAGCACTAACGGAATTCAGAAGCAAATGGGATGCAACAGTTGAGTTCACAGAGAAGGAGGCCAGCAACACGAACATGATAGTCGAAGGGGTGGTGGCCATCGGAAAGGAAGGTGGTTACGACCTAGTTGTGGTCGGGAAGGGTCGGGTTCCCTCCAGCATGGTGGTGAAACTAGCGGACCGACCGGCCGAGCACGCAGAGTTGGGGCCAGTAGGGGACATACTAGCCAGCTCTGGTAGGGGAATAGTATCATCAATACTAGTAATTCAACAACATGGAGGAGGTGGTCATGCAGAAGAAGCTCCGGTTTTGAAGATAGCAGAATCGAGTAAGAATGAACAGCCTTTGGCAACCGATGGAGCTTCAACTAATGTATAA 2532 53.95 MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIVGGILLGPSALGRNKAYLHRIFPQWSTPILESVASIGLLFFLFLVGLELDLSSIRRSGRRAFGIALAGISVPFLSGIGVAFILRKTVDGVDKVGYGQFIVFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDIAAWILLALAVALAGNGEGGAQKSPLVSVWVLLSGGGYVVFMMVVIRPGMKWVVRRCSYEHDALGDAYICLTLVGVLVSGFVTDLIGIHSIFGGFVFGLTIPKGGRFAERLIERIEDFVSGLLLPLYFASSGLKTDVAKIKGGRAWGLLALVISTACAGKILATFVAAMAFLIPAREALALGLLMNTKGLVELIVLNIGKEKKVLNDEIFAILVLMALFTTFITTPTVMAVYKPARGGSTSRTHRKLHDLSADDELRILACLHSSGNVPSLMGLTEATRSTKNSSLKLFVMHLVELTERSSSIMMVQRARKNGFPFFARFRKAGEWRDQMAAAFQAYSQLGRVKVRPTTAVSSLATMHEDICHVANEKRVTMIILPFHRNWRVFDGDGKEEEENVGHGWRVVNQRVLKNAPCSVAVLVDRGFGANTVHTFGPGPIVGVAQRVCIVFFGGPDDREALELGGLMAEHPAVKVTVVRFRPSPSNGFEGSNVILRPMHSKSGDNHYSFSTAPINREKEKELDDVALTEFRSKWDATVEFTEKEASNTNMIVEGVVAIGKEGGYDLVVVGKGRVPSSMVVKLADRPAEHAELGPVGDILASSGRGIVSSILVIQQHGGGGHAEEAPVLKIAESSKNEQPLATDGASTNV 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4586936 4590082 + CmaCh03G004360.1 Cma03g00436 290007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00436 843 Pfam Sodium/hydrogen exchanger family 35 427 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cma03g00436 843 PANTHER BNAC06G14930D PROTEIN 3 825 - -
Cma03g00436 843 Gene3D - 28 436 IPR038770 -
Cma03g00436 843 Gene3D - 455 787 - -
Cma03g00436 843 PANTHER CATION/H + ANTIPORTER 3 825 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00436 Cma-Chr3:4586936 Cma16g00569 Cma-Chr16:2931153 0 dispersed
Cma03g00436 Cma-Chr3:4586936 Cma07g00971 Cma-Chr7:4697257 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00436 - - csv:101207589 1387.86