Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00436 ATGAGCGTGAACATAACCTCCATCAAAATCGCCTCAAATGGCGTCTGGCAAGGCGACAACCCCCTGCACTTCGCTTTCCCTCTCTTAATCCTTCAGTCCGTCCTCATTCTCCTCCTCTCCCGCCTACTCGCTCTCCTCCTCAAACCTCTCCGGCAGCCCAAAGTCATCGCCGAAATCGTCGGTGGGATTCTTCTGGGTCCGTCGGCGCTCGGCCGAAACAAAGCTTATTTGCACCGGATTTTCCCTCAATGGAGCACTCCGATTCTCGAATCCGTTGCCAGCATCGGTTTATTGTTCTTCCTGTTCCTCGTCGGACTCGAACTCGATTTGTCCTCCATTCGTCGGAGCGGTCGGAGGGCTTTCGGAATCGCCCTCGCTGGAATCTCTGTCCCCTTCCTCTCCGGTATCGGAGTAGCCTTCATCCTCCGCAAAACCGTAGACGGCGTTGACAAAGTCGGCTATGGTCAATTCATTGTATTCATGGGTGTCGCCTTGTCCATCACTGCCTTCCCTGTTCTTGCTCGCATTTTAGCTGAGCTTAAGCTCCTCACTACCCAAGTCGGCGAAACCGCCATGGCTGCTGCTGCGTTCAACGACATCGCCGCTTGGATTCTCCTCGCACTTGCGGTGGCTCTCGCCGGTAACGGCGAAGGTGGGGCCCAAAAGAGTCCGTTGGTGTCCGTGTGGGTCCTACTTTCCGGAGGTGGGTATGTCGTTTTCATGATGGTGGTTATTCGTCCCGGAATGAAATGGGTTGTGCGGCGGTGTTCGTACGAGCACGATGCTCTGGGCGACGCGTATATCTGTTTGACGTTAGTGGGGGTGTTGGTGTCGGGATTCGTGACGGATTTGATCGGAATTCATTCGATTTTTGGGGGTTTTGTGTTTGGATTAACGATTCCGAAAGGGGGAAGGTTTGCGGAGAGATTGATTGAGAGGATTGAAGATTTTGTGTCGGGTCTTCTTCTTCCTCTGTATTTTGCTTCCAGTGGATTGAAGACGGACGTGGCTAAGATTAAAGGGGGCAGAGCGTGGGGGCTGCTGGCGTTAGTTATCTCCACTGCGTGCGCCGGTAAGATTCTGGCCACATTTGTGGCGGCGATGGCGTTTCTGATCCCGGCGAGAGAGGCGTTGGCGTTGGGGCTTCTTATGAACACTAAAGGCCTGGTTGAATTGATTGTTCTCAATATTGGCAAAGAGAAAAAGGTTTTGAACGACGAAATCTTCGCCATTTTAGTGTTAATGGCACTGTTCACAACATTCATCACTACCCCCACCGTGATGGCGGTTTACAAGCCAGCACGCGGCGGCTCCACCTCGCGAACCCATCGGAAACTCCATGACCTCTCGGCCGACGACGAGCTTCGGATCCTAGCCTGTCTCCACAGCTCTGGCAATGTGCCGTCCCTCATGGGTCTGACCGAAGCAACTCGCAGCACAAAAAACTCGTCACTCAAACTCTTCGTGATGCACCTGGTCGAGCTCACCGAGCGGTCTTCGTCCATCATGATGGTCCAACGCGCCCGCAAAAACGGCTTTCCTTTCTTCGCCAGGTTCCGGAAGGCCGGTGAGTGGCGCGACCAGATGGCTGCTGCCTTTCAGGCCTACAGCCAACTGGGTCGGGTTAAGGTCCGCCCCACTACCGCTGTCTCTTCCTTGGCCACTATGCATGAGGATATCTGCCACGTGGCGAACGAGAAGAGGGTCACGATGATCATCTTGCCATTCCATCGGAATTGGAGGGTATTTGACGGCGACGGCAAGGAAGAGGAGGAGAATGTGGGCCATGGCTGGAGAGTTGTGAACCAACGGGTTCTGAAGAATGCGCCTTGCTCCGTGGCGGTTCTTGTGGACCGTGGATTTGGGGCCAATACGGTTCATACGTTTGGGCCTGGGCCCATTGTTGGTGTGGCCCAAAGGGTTTGTATCGTGTTTTTTGGTGGGCCCGATGACCGGGAGGCGCTGGAGTTGGGTGGCCTGATGGCGGAGCATCCGGCGGTGAAGGTCACGGTGGTAAGGTTCCGGCCGTCGCCATCGAATGGGTTTGAGGGTAGCAACGTCATTTTGCGCCCCATGCATTCCAAATCTGGCGACAACCATTATAGCTTCTCCACAGCTCCAATCAACCGGGAAAAAGAAAAGGAGCTAGATGATGTAGCACTAACGGAATTCAGAAGCAAATGGGATGCAACAGTTGAGTTCACAGAGAAGGAGGCCAGCAACACGAACATGATAGTCGAAGGGGTGGTGGCCATCGGAAAGGAAGGTGGTTACGACCTAGTTGTGGTCGGGAAGGGTCGGGTTCCCTCCAGCATGGTGGTGAAACTAGCGGACCGACCGGCCGAGCACGCAGAGTTGGGGCCAGTAGGGGACATACTAGCCAGCTCTGGTAGGGGAATAGTATCATCAATACTAGTAATTCAACAACATGGAGGAGGTGGTCATGCAGAAGAAGCTCCGGTTTTGAAGATAGCAGAATCGAGTAAGAATGAACAGCCTTTGGCAACCGATGGAGCTTCAACTAATGTATAA 2532 53.95 MSVNITSIKIASNGVWQGDNPLHFAFPLLILQSVLILLLSRLLALLLKPLRQPKVIAEIVGGILLGPSALGRNKAYLHRIFPQWSTPILESVASIGLLFFLFLVGLELDLSSIRRSGRRAFGIALAGISVPFLSGIGVAFILRKTVDGVDKVGYGQFIVFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDIAAWILLALAVALAGNGEGGAQKSPLVSVWVLLSGGGYVVFMMVVIRPGMKWVVRRCSYEHDALGDAYICLTLVGVLVSGFVTDLIGIHSIFGGFVFGLTIPKGGRFAERLIERIEDFVSGLLLPLYFASSGLKTDVAKIKGGRAWGLLALVISTACAGKILATFVAAMAFLIPAREALALGLLMNTKGLVELIVLNIGKEKKVLNDEIFAILVLMALFTTFITTPTVMAVYKPARGGSTSRTHRKLHDLSADDELRILACLHSSGNVPSLMGLTEATRSTKNSSLKLFVMHLVELTERSSSIMMVQRARKNGFPFFARFRKAGEWRDQMAAAFQAYSQLGRVKVRPTTAVSSLATMHEDICHVANEKRVTMIILPFHRNWRVFDGDGKEEEENVGHGWRVVNQRVLKNAPCSVAVLVDRGFGANTVHTFGPGPIVGVAQRVCIVFFGGPDDREALELGGLMAEHPAVKVTVVRFRPSPSNGFEGSNVILRPMHSKSGDNHYSFSTAPINREKEKELDDVALTEFRSKWDATVEFTEKEASNTNMIVEGVVAIGKEGGYDLVVVGKGRVPSSMVVKLADRPAEHAELGPVGDILASSGRGIVSSILVIQQHGGGGHAEEAPVLKIAESSKNEQPLATDGASTNV 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4586936 4590082 + CmaCh03G004360.1 Cma03g00436 290007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00436 843 Pfam Sodium/hydrogen exchanger family 35 427 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cma03g00436 843 PANTHER BNAC06G14930D PROTEIN 3 825 - -
Cma03g00436 843 Gene3D - 28 436 IPR038770 -
Cma03g00436 843 Gene3D - 455 787 - -
Cma03g00436 843 PANTHER CATION/H + ANTIPORTER 3 825 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00436 - - - csv:101207589 1387.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00436 Cma-Chr3:4586936 Cma16g00569 Cma-Chr16:2931153 0 dispersed
Cma03g00436 Cma-Chr3:4586936 Cma07g00971 Cma-Chr7:4697257 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g700 Blo01g01126 . Bda01g00243 . . . . . . . Cma03g00436 . Car03g00383 . Sed14g0469 . . Bhi03g01986 Tan03g0976 Cmetu08g1910 . . . . Cla04g00826 Cam04g0889 Cec04g0974 Cco04g1032 Clacu04g0882 Cmu04g0873 Cre04g0930 . Cone10ag0299 . . . Csa04g01471 Chy08g00771 . . . . . . . Bma01g01881 . . Cmo03g00449 . . . . . . Cpe19g00367 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma02g00628 . 10 790 Antiporter Super Family AT2G13620 71.0 0.0e+00 1107.0
Cma20g01053 . 10 729 Antiporter Super Family AT2G13620 63.9 8.1e-273 937.2
Cma03g00436 . 75 843 Antiporter Super Family AT3G53720 67.0 1.9e-279 959.1
Cma07g00971 . 75 821 Antiporter Super Family AT3G53720 64.0 3.2e-263 905.2
Cma16g00569 . 1 797 Antiporter Super Family AT5G41610 68.9 5.9e-308 1053.9
Cma16g00568 . 1 770 Antiporter Super Family AT5G41610 67.7 1.4e-293 1006.1
Cma16g00567 . 1 750 Antiporter Super Family AT5G41610 63.8 1.6e-276 949.5
Cma04g00715 . 7 750 Antiporter Super Family AT5G41610 63.1 6.8e-272 934.1
Cma03g00436 . 8 818 Antiporter Super Family AT5G41610 51.5 4.3e-210 728.8
Cma07g00971 . 8 804 Antiporter Super Family AT5G41610 50.3 2.5e-205 713.0
Cma16g00568 . 1 769 Antiporter Super Family AT4G23700 66.1 1.1e-288 989.9
Cma16g00569 . 1 779 Antiporter Super Family AT4G23700 63.5 7.1e-277 950.7
Cma16g00567 . 11 769 Antiporter Super Family AT4G23700 61.3 9.3e-269 923.7
Cma04g00715 . 17 748 Antiporter Super Family AT4G23700 59.5 3.1e-256 882.1
Cma16g00569 . 5 779 Antiporter Super Family AT3G17630 64.6 2.3e-272 935.6
Cma16g00568 . 4 769 Antiporter Super Family AT3G17630 63.5 4.3e-271 931.4
Cma16g00567 . 4 769 Antiporter Super Family AT3G17630 59.9 7.4e-255 877.5
Cma04g00715 . 9 748 Antiporter Super Family AT3G17630 57.7 1.5e-239 826.6
Cma03g00436 . 2 808 Antiporter Super Family AT3G17630 51.6 8.3e-206 714.5
Cma07g00971 . 8 805 Antiporter Super Family AT3G17630 50.7 1.5e-199 693.7
Cma16g00568 . 11 769 Antiporter Super Family AT1G64170 58.5 8.4e-238 820.8
Cma16g00569 . 10 789 Antiporter Super Family AT1G64170 56.4 4.4e-231 798.5
Cma16g00567 . 15 750 Antiporter Super Family AT1G64170 55.9 4.9e-222 768.5
Cma04g00715 . 11 750 Antiporter Super Family AT1G64170 52.8 4.9e-214 741.9
Cma02g00628 . 10 790 Antiporter Super Family AT2G13620 71.0 0.0e+00 1107.0
Cma20g01053 . 10 729 Antiporter Super Family AT2G13620 63.9 8.1e-273 937.2
Cma16g00568 . 11 769 Antiporter Super Family AT1G64170 58.5 8.4e-238 820.8
Cma16g00569 . 10 789 Antiporter Super Family AT1G64170 56.4 4.4e-231 798.5
Cma16g00567 . 15 750 Antiporter Super Family AT1G64170 55.9 4.9e-222 768.5
Cma04g00715 . 11 750 Antiporter Super Family AT1G64170 52.8 4.9e-214 741.9
Cma16g00568 . 1 769 Antiporter Super Family AT4G23700 66.1 1.1e-288 989.9
Cma16g00569 . 1 779 Antiporter Super Family AT4G23700 63.5 7.1e-277 950.7
Cma16g00567 . 11 769 Antiporter Super Family AT4G23700 61.3 9.3e-269 923.7
Cma04g00715 . 17 748 Antiporter Super Family AT4G23700 59.5 3.1e-256 882.1
Cma16g00569 . 1 797 Antiporter Super Family AT5G41610 68.9 5.9e-308 1053.9
Cma16g00568 . 1 770 Antiporter Super Family AT5G41610 67.7 1.4e-293 1006.1
Cma16g00567 . 1 750 Antiporter Super Family AT5G41610 63.8 1.6e-276 949.5
Cma04g00715 . 7 750 Antiporter Super Family AT5G41610 63.1 6.8e-272 934.1
Cma03g00436 . 8 818 Antiporter Super Family AT5G41610 51.5 4.3e-210 728.8
Cma07g00971 . 8 804 Antiporter Super Family AT5G41610 50.3 2.5e-205 713.0
Cma16g00569 . 5 779 Antiporter Super Family AT3G17630 64.6 2.3e-272 935.6
Cma16g00568 . 4 769 Antiporter Super Family AT3G17630 63.5 4.3e-271 931.4
Cma16g00567 . 4 769 Antiporter Super Family AT3G17630 59.9 7.4e-255 877.5
Cma04g00715 . 9 748 Antiporter Super Family AT3G17630 57.7 1.5e-239 826.6
Cma03g00436 . 2 808 Antiporter Super Family AT3G17630 51.6 8.3e-206 714.5
Cma07g00971 . 8 805 Antiporter Super Family AT3G17630 50.7 1.5e-199 693.7
Cma03g00436 . 75 843 Antiporter Super Family AT3G53720 67.0 1.9e-279 959.1
Cma07g00971 . 75 821 Antiporter Super Family AT3G53720 64.0 3.2e-263 905.2
Cma17g00962 . 47 790 Antiporter Super Family AT3G52080 54.0 4.0e-232 802.0
Cma08g00518 . 90 833 Antiporter Super Family AT3G52080 54.1 7.0e-229 791.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004121 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 3 3 1 2 1 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00436 Cma_Chr03 FPKM 0.739925 0.503321 0.134807 0.225974 1.338176 1.342914 1.136532 0.239494 0.253378 0.259484