Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma03g00442 | ATGCATTTTACTTCCTATAAAAGCAGAACAAATATGAGACATAAAAGAAATTATAGCAAAACACCTGTTCATCTTGCAGCTTCAGCATCCTTCAGCATCAGGATGAATCCCCAAGTTGGCCAATGGTGTGTCTCAGCCAAGCCTTTTTTTGCTGTGGTGTTCTTGCAGTTTGGGCTTGCAGGAATGGACATTCTGTCAAAAGCAGCTCTGAACCAAGGAATGAGCAACTATGTTCTTGTTGTTTACCGCCATGCAGTTGCTACAATTGTTATAGCCCCTTTTGCATTGATTTTTGACAAGAAGGTCAGACCAAAGATGACAATTCCAATCTTTGCCAAGTTAATGATCCTCAGCTTGCTAGAGCCTGTGATTGATCAGAACTTATATTTCTTGGGAATGAAGTACACAACAGCAACTTTTGCAGCTGCCATGTGCAATATTCTTCCTGCCATCACCTTTGTAATGGCTTGGATCCTCAGGCTAGAGAAGGTTAAAATCAAAAGCATCAGAAGCCAAGCCAAATTGGTGGGAACAATAGCAACAGTAGGAGGAGCCATGATAATGACACTGATAAAAGGCCCAATTCTGGAGCTATTCTGGGTGAAACAGAGAGCAGATCATGCACAACAAAGGGGCGATATCAGCCTTCAACACACAATCAAAGGTTCAATAATGATCACAATTGGGTGCTTCAGCTGGGCCTGCTTCATGATTCTTCAGGCAATCACTTTGAAAGCTTACCCAGCTGAGCTTTCTCTCACGGCTTGGATCTGCCTGCTGGGCACGGCGGAGGGCACTGTGTTGGCTTTGGTGATGGAAAGAGGAAACGCCGCCGTTTGGTCCATTGGTTGGGGAACCAAATTGCTCGCTGCCGTTTATAGTGGGATATTTTGTTCAGGACTTGCTTATTACATTCAAGGATTAGTGATGAAAGACAAAGGTCCTGTCTTTGTCACTGCCTTTAGCCCATTGAGTATGGTCATCGTCGCTATCATGAGCTCATTCATTTTGGGTGAACGTCTATATTTTGGCAGGATACTTGGAGCTGGGGTGATAATTGTGGGACTATACCTTGTTGTTTGGGGCAAAAATAAAGATGGGGATTCCTTAAATGAAGACTTGAAATTGCCCACCAAACAAACAACAGAGATGCATAAAAGTTCATCATCAGTTCAAGAACTTAATTCTGTTTGA | 1194 | 43.05 | MHFTSYKSRTNMRHKRNYSKTPVHLAASASFSIRMNPQVGQWCVSAKPFFAVVFLQFGLAGMDILSKAALNQGMSNYVLVVYRHAVATIVIAPFALIFDKKVRPKMTIPIFAKLMILSLLEPVIDQNLYFLGMKYTTATFAAAMCNILPAITFVMAWILRLEKVKIKSIRSQAKLVGTIATVGGAMIMTLIKGPILELFWVKQRADHAQQRGDISLQHTIKGSIMITIGCFSWACFMILQAITLKAYPAELSLTAWICLLGTAEGTVLALVMERGNAAVWSIGWGTKLLAAVYSGIFCSGLAYYIQGLVMKDKGPVFVTAFSPLSMVIVAIMSSFILGERLYFGRILGAGVIIVGLYLVVWGKNKDGDSLNEDLKLPTKQTTEMHKSSSSVQELNSV | 397 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 4615905 | 4619427 | + | CmaCh03G004420.1 | Cma03g00442 | 290013 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma03g00442 | 397 | PANTHER | WAT1-RELATED PROTEIN | 42 | 376 | IPR030184 | GO:0016021|GO:0022857 | |
| Cma03g00442 | 397 | PANTHER | WAT1-RELATED PROTEIN | 42 | 376 | - | - | |
| Cma03g00442 | 397 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 82 | 190 | - | - | |
| Cma03g00442 | 397 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 269 | 365 | - | - | |
| Cma03g00442 | 397 | Pfam | EamA-like transporter family | 221 | 360 | IPR000620 | GO:0016020|GO:0016021 | |
| Cma03g00442 | 397 | Pfam | EamA-like transporter family | 57 | 169 | IPR000620 | GO:0016020|GO:0016021 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma03g00442 | Cma-Chr3:4615905 | Cma04g01783 | Cma-Chr4:8994980 | 5.01E-150 | dispersed | |
| Cma08g01089 | Cma-Chr8:6793906 | Cma03g00442 | Cma-Chr3:4615905 | 9.87E-86 | dispersed | |
| Cma18g00826 | Cma-Chr18:7215575 | Cma03g00442 | Cma-Chr3:4615905 | 1.97E-117 | dispersed | |
| Cma15g00409 | Cma-Chr15:1834809 | Cma03g00442 | Cma-Chr3:4615905 | 4.41E-137 | wgd | |
| Cma03g00442 | Cma-Chr3:4615905 | Cma04g00224 | Cma-Chr4:1085071 | 8.43E-141 | wgd | |
| Cma03g00442 | Cma-Chr3:4615905 | Cma04g01197 | Cma-Chr4:6104958 | 3.82E-137 | wgd | |
| Cma03g00442 | Cma-Chr3:4615905 | Cma04g02624 | Cma-Chr4:17910496 | 4.38E-139 | wgd | |
| Cma03g00442 | Cma-Chr3:4615905 | Cma07g00964 | Cma-Chr7:4659149 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma03g00442 | - | - | csv:101217902 | 644.039 |