Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma03g00450 | ATGGAATCCTTGCCCTACGCCCACGTTGATTCGAGCCTTCGAGCCCTCGCCGGTCAGGCCGAGGGCTTTGGCCGTTCTGCCATTGGTGGTCTTTATGGCTCTGTTTATTGTGTCACTAATTTAGCAGATGATGGTCCGGGATCGCTTAGGTTCGGGTGTCGTCTTAAAGAGCCCCTTTGGATTATCTTTGAAGTTTCAGGCACAATTCACTTGTCGACATTTCTTAGCGTGTCATCATATAAAACTGTAGATGGTCGTGGACAAAGGATAAAATTTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATCATTTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGAGTTCAAATCAAACCCAATTCAAAGCACATATGGATAGATCGTTGCAGCCTCCGAGACTATGATGATGGGTTGATTGATATCACCAGAGGAAGCACAGATATCACTATTTCTAGGTGCCACTTCTCACAGCATGACAAGACGATGCTCATCGGAGCCGATCCATCGCACGTCGGCGATCGATGCATTCGTGTCACTATTCACCACTGTTTTTTCGATGGTACTCGGCAACGGCATCCTCGTGTTAGATTTGCTCAAGTGCATCTATACAATAATTACACCAGAAACTGGGGGATCTATGCTGTCTGTGCTAGTGTAGAATCACAGATATACTCTCAGTGCAACATATACGAAGCAGGAGAGAAAAAGGTGGCATTTAGATACCTCGCTGAAAAGGCAGCAGACAAGGAAGAGCCATCAAGTGGGTGCATATGGTCCGACGGAGACTTATTTGTAAATGGCACTCAAAGCGGGCTGTCGGCGCCAACCACTGGACACAGCTCGTTTCATCCCTCACAACATTACACTGCCTGGACAGTGGAACCTCCAACGGATGCTCTAAAACAGATCCTCCAACTTTGTACTGGATGCCAAAACATCCAAACCCCCACTGATCTGCCTCTTCCACCTTAG | 996 | 46.99 | MESLPYAHVDSSLRALAGQAEGFGRSAIGGLYGSVYCVTNLADDGPGSLRFGCRLKEPLWIIFEVSGTIHLSTFLSVSSYKTVDGRGQRIKFTGKGLRLKECEHVIICNLEFEGGRGHDVDGVQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITISRCHFSQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRFAQVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGEKKVAFRYLAEKAADKEEPSSGCIWSDGDLFVNGTQSGLSAPTTGHSSFHPSQHYTAWTVEPPTDALKQILQLCTGCQNIQTPTDLPLPP | 331 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 4652415 | 4656307 | - | CmaCh03G004500.1 | Cma03g00450 | 290021 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma03g00450 | 331 | SUPERFAMILY | Pectin lyase-like | 17 | 321 | IPR011050 | - | |
| Cma03g00450 | 331 | ProSiteProfiles | Zinc finger integrase-type profile. | 278 | 319 | IPR003308 | GO:0008270 | |
| Cma03g00450 | 331 | Pfam | Pectate lyase | 75 | 237 | IPR002022 | - | |
| Cma03g00450 | 331 | PANTHER | PECTATE LYASE 18-RELATED | 1 | 324 | IPR045032 | GO:0030570 | |
| Cma03g00450 | 331 | PANTHER | PECTATE LYASE | 1 | 324 | - | - | |
| Cma03g00450 | 331 | Gene3D | - | 6 | 311 | IPR012334 | - | |
| Cma03g00450 | 331 | SMART | amb_all | 31 | 244 | IPR002022 | - | |
| Cma03g00450 | 331 | PRINTS | Pollen allergen Amb family signature | 19 | 36 | IPR018082 | - | |
| Cma03g00450 | 331 | PRINTS | Pollen allergen Amb family signature | 74 | 90 | IPR018082 | - | |
| Cma03g00450 | 331 | PRINTS | Pollen allergen Amb family signature | 221 | 240 | IPR018082 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma03g00450 | Cma-Chr3:4652415 | Cma03g00550 | Cma-Chr3:5115749 | 1.20E-53 | dispersed | |
| Cma03g00450 | Cma-Chr3:4652415 | Cma07g00958 | Cma-Chr7:4625139 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma03g00450 | K01728 | - | csv:101219724 | 619.002 |