Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00464 ATGAATGCTCATGCTAGCAGGCAGAATGGGTTAAGAGAAACAAGTCATCACGCACGGGATGGTAATGGAATTGTGAACAGTGGTGTATCTGGCAGGGAACAGAGCCCGGTTGAGGAAAACGAGTTGAAGGTCAATGGATTAACTAGAAATACAGAAGATGGACGAAAATCCACCGTTCAAGCCCAGGACATTCTGCAAATACATCAGCAGCAGCATCCTCAAGGGTCTATGGTCTGCTGGGAGAGATTTCTTCATCTTAGGTCCCTAAAGGTTTTGCTTGTAGAAAATGATGATTCCACCCGGCACCTAGTCACTGCACTGCTTCGTAATTGCAGTTATGAAGTTATTGCGGCTGCAAATGGACTACATGCATGGAAGATGCTTGAAGATCTGACAAATCACATAGATCTTGTCCTAACAGAGGTGGTCATGCCTTGCTTATCTGGCATTGGTCTTCTATGCAAGATTACGAGCCATAAAACGAGGAAGAATATACCTGTAATCATGATGTCATCTCATGATTCAATGGGTTTAGTCTTCAAATGTTTGTCAAAGGGTGCTGTTGATTTTTTAGTGAAGCCCATTCGGAAGAATGAGCTTAAAAACCTTTGGCAACATGTTTGGAGAAGATGCCATAGCTCTAGCGGTAGTGGAAGTGAGAGTGGCACACAGACCCAAAAATCTGTGAAGTCAAAAGGCGTTGAAAAAACAGACAACAACACTGGGAGCAATGATGAAGAAGAAGACAATGAGAGCATTGGTTTCAATATTGATGATGGAAGTGACGATGGTAGTGGCACACAGAGTTCTTGGACCAAGCAAGCTATAGAAGTTGAAAGCCCTCGACCAGTATCTGCATCAGCATGGAATAAAAAACGTGAACGTCCTGATAGTACTTGTGCTCAAGTTGTCCACTCAAATGCTGATGCATTTGCTAATAATGTGCCAATTGTTTTGACAGCAGGGTGCCAGGGGCAGAAAAAGCAACTTGTTGAATTAGGTGTGCACGGCGATTTAGATTTACAACTTGAACTCTCGACGGAACATCCGTCCAATCTAATTAACAGAAAACAGAACATGGTGCTTGAGATCGGGTCCAGTGGATTCAATGAGCAGTTCAACAAAGCAGATCTTGACCTCAACTCTGATAGCCCATGCAGCAAACTTAAGTGCGAGGAAACAACTGTTACTGGTCTTGCTACTAATCTTACTGATTCTAAGATGGATGTCACTGTGTTTGAGGTGCCGAGCAACCATCCCAAGACTACAGACATTAAGAATAAAAGTGTTACAGATTCAGAAGATTTTCCATCCCTTGAGCTTGGATTAAAAAGGCTTAGAGGAGTTCAAGCGACAGGGAAAGCTGTCCAAGATGAGCGGAATGTTTTGAGACGCTCAGATTCTTCAGCATTTTCTAGGTACAATGCTGGCTCGAATTCTAACAAGACTCCAACTGGGAATGCCGGAAGTAGCTCTCCACCTGTCAATGGCAGAGAAGTTACAAATCAAGAGAACATGCAAGATATTCGTTCTCATTCAAGTGGTAACCCTCCCAATCAATGTTCAAATGGAGATAGCAATAATATCGACATGGGGTCCACTACCAATAATGCATTTTCCAAGTCCATAGTTATTAATAACAAGTCAGCAATGGCATCAACTGTCAACTGTTTACACCCATCGGCAGCTTTCCAACCTGTTAAGAATGACAGTCTATCCGTTCCTCAGAAAGCTGATAACGTCATTAATGTTACAACTACAGCAATGCAAGCTCAGTCTAATTTTGTTCACAGGGAATCTCAGATGCAGCAACCTTGTCACCCATATGATCCCACTCATCAGTTTGTCCACAATATGCAACGAGTGTCATCTGACCATAATGATTATTCATTAAAGAAAACATCTGCAGCTATCGCGCATTGTGGGTCAACCAATGTGTTCAATGGCCATGTAGAAGGTAATGCGGCTAATTATAGTGTGAACGGAAGCGCCTCGGGCAGTAACCATGGAAGCAATGGCCAAAATGGGAGCTGCAATGCAGTAAATGCTGGAGGGCTGAATATGGAAAGTGATAATGGAATAGGTCAGAAAAGCCGAAGTGGAGATGCCAGTGGAAGTGGAAGTGGGAGTGGCAGTGGAAGCGGAAACAAAGTGGACCTAAGCAAAGTTTCACAAAGGGAAGCTGCCCTGACTAAGTTTCGCCAGAAAAGGAAGGAAAGATGCTTCCGTAAAAAGGTCCGATACCAAAGCAGAAAGCGATTAGCAGAACAGAGACCTCGTGTCCGGGGACAACTCAACAGGACTTCAGTGCTCATACTTATTGCGACAAATCCAAGAGATGCCTCAGTTGAGACATGGAATCCTGCATGA 2370 43.59 MNAHASRQNGLRETSHHARDGNGIVNSGVSGREQSPVEENELKVNGLTRNTEDGRKSTVQAQDILQIHQQQHPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKMLEDLTNHIDLVLTEVVMPCLSGIGLLCKITSHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKGVEKTDNNTGSNDEEEDNESIGFNIDDGSDDGSGTQSSWTKQAIEVESPRPVSASAWNKKRERPDSTCAQVVHSNADAFANNVPIVLTAGCQGQKKQLVELGVHGDLDLQLELSTEHPSNLINRKQNMVLEIGSSGFNEQFNKADLDLNSDSPCSKLKCEETTVTGLATNLTDSKMDVTVFEVPSNHPKTTDIKNKSVTDSEDFPSLELGLKRLRGVQATGKAVQDERNVLRRSDSSAFSRYNAGSNSNKTPTGNAGSSSPPVNGREVTNQENMQDIRSHSSGNPPNQCSNGDSNNIDMGSTTNNAFSKSIVINNKSAMASTVNCLHPSAAFQPVKNDSLSVPQKADNVINVTTTAMQAQSNFVHRESQMQQPCHPYDPTHQFVHNMQRVSSDHNDYSLKKTSAAIAHCGSTNVFNGHVEGNAANYSVNGSASGSNHGSNGQNGSCNAVNAGGLNMESDNGIGQKSRSGDASGSGSGSGSGSGNKVDLSKVSQREAALTKFRQKRKERCFRKKVRYQSRKRLAEQRPRVRGQLNRTSVLILIATNPRDASVETWNPA 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4713442 4720796 - CmaCh03G004640.1 Cma03g00464 290035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00464 789 ProSiteProfiles Response regulatory domain profile. 90 208 IPR001789 GO:0000160
Cma03g00464 789 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 26 757 - -
Cma03g00464 789 ProSiteProfiles CCT domain profile. 726 768 IPR010402 GO:0005515
Cma03g00464 789 SMART REC_2 89 204 IPR001789 GO:0000160
Cma03g00464 789 Pfam Response regulator receiver domain 91 202 IPR001789 GO:0000160
Cma03g00464 789 MobiDBLite consensus disorder prediction 467 533 - -
Cma03g00464 789 Gene3D - 88 254 - -
Cma03g00464 789 MobiDBLite consensus disorder prediction 1 55 - -
Cma03g00464 789 Pfam CCT motif 726 764 IPR010402 GO:0005515
Cma03g00464 789 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 757 IPR045279 GO:0009736
Cma03g00464 789 SUPERFAMILY CheY-like 87 213 IPR011006 -
Cma03g00464 789 MobiDBLite consensus disorder prediction 451 533 - -
Cma03g00464 789 MobiDBLite consensus disorder prediction 261 276 - -
Cma03g00464 789 MobiDBLite consensus disorder prediction 664 721 - -
Cma03g00464 789 MobiDBLite consensus disorder prediction 213 230 - -
Cma03g00464 789 MobiDBLite consensus disorder prediction 664 723 - -
Cma03g00464 789 MobiDBLite consensus disorder prediction 213 296 - -
Cma03g00464 789 CDD psREC_PRR 91 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00464 Cma-Chr3:4713442 Cma14g02156 Cma-Chr14:14772231 1.26E-15 dispersed
Cma03g00464 Cma-Chr3:4713442 Cma07g00944 Cma-Chr7:4542001 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34613 PF00072 Response_reg 1.70E-20 CL0304 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00464 K12129 - csv:101210765 1271.14