Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g00479 | ATGGGTCGTTCTCATTGGAATTTGTTCATGAAGATCTTAATTGGGTTGCTCTTGCTCTTCACCAACCCTTTTTGCTTTGGAGATACTGACCTCCGTGATGTTGCTGCAATCAATGCGTTATTTATTGCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGAGAGAAGTGGCAAGGGGTTGAGTGTGTGTTCTCAAATATAACAGCGATACAACTCAGTGGTTTGAATTTGGGAGGAGAGCTAGGCACTAGCTTAGACCAATTTGAGTCAATAATATCAATAGATCTTAGCAATAACCATATTGGAGGGATTATTCCATCTGCATTGCCTGCTACACTAAGAAGTTTTTCTTTATCAGCTAATCAGTTTACTGGAAGCATTCCCTCTGCACTTGCCTCTCTAACACAATTGATGGACCTGTCAATAAACAACAACCTTCTTACCGGGGCAATACCCGATGTCTTCCAGCTGCTTAATGGCTTGAACAACTTGGACTTGTCGGGCAACAACTTGAGCGGTCAGCTGCCTCCCTCCATGGCGGATTTGTTCTCCCTTACTACATTGCACTTGCAGAACAATCGACTTTCTGGGATGCTCGACGTTCTACAGGATCTTCCGTTGTCGGATTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGATGGAAACCCTTTTAATACTACCATAATTCCATCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTGGCGCCTGTTACTGCGGGACGACCAACCAGACAGACGGGTGCGGGTCAGCCATTGTCATCAGGGAGTTCTGAATCCGATGGAGGAAGGAGTTTTTTCTCTGGTAAGCGGATCGTTTGGATTGTTATTATTGGTGCAGTAATATTAGTGGCATTGGGAGCTTGTATTCTGTTATCGGTATGCTTGAAAAGAAGAAGCAAGCATCGAGAAGAGATGAAGATGGTTCGTGAAAATGCTGATATGGCTTCTAAAGATAAGCCGAAACTCACGAAGCCTTCGGTTGAAGTTGATGACATGGAGAAAGGTCGAAGGGAGACCACTCTTAAGCCAGTTGATAGAGACGGGATGAAGGATAGAATAATGGATTATACCTCCCCAAAGCTACATGAAAACCCATTTGCCTCCAATACGAGCTTTCGTGAAGACCATACGGAGAGTTTTTGTGATAGACGGGGCGCAAATGGGAAGAGAAAAGATGCATCCAATATGAGTTTCCGTGACGACCATACGGAGAGTTCGAGCATAAGCATAGATGAGTTGCTTGCACGACCTCCTCCTCCCCCTCCATTTTCGCTCCTTTCGACTCAGGAGATTGCAAAACCAATTGTGACAGCCGACGTACCTAGTCGAGTACCTAAAAAACTAAACACGAGTTCTTTAAGAGTTTTCACGATCGCGTCGCTTCAGCAGTATACTAATAGTTTCTCTGAAGATAATCTTCTTGGGAAAGGCATGCTTGGTAGTGTCTATAGAGCTGAACTACCAAATGGAAGGCTTTTGGCCGTTAAAAAACTGGATGGATCCTCTTTGACTCGTTGGAACGACGATGAATTTCACAACCTCGTGTCTGATATATGCGAAATTCGGCACGATAACATTGTGGAGCTTAAGGGCTATTGTGCTGAGCATGGACAATACCTACTCATTTACGAGTATTGCGAAAATGGCACACTCTATGAAGCACTCCACGTCGACAAGGAGATGCATCAAATGCTTTCGTGGAACGTGCGCGTGAGGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTACATGAGGCCTGTCAGCCGCCAATTGTGCACCAAAATTTTAAGTCTGCTAACATTCTCCTGGACAATGAGCTAAAAGCACAGCTCTCTGACTCTGGCCTAGCTTCACTGCTTGATAATCAGTCGTCTGTACGATTCCTCCCAACTCATGGTTATAGTGCTCCGGAATTTGAGTCGGGAACTTACACGTACCAAAGCGATGTTTTTAGCTTTGGAGTTGTAATGCTAGAGCTTCTCACTGGTCGGAAGTCGTGTGATCGAACACTGCCTCGAGGAGAGCAATATCTTGTTCGTTGGGCTATTCCAAGGCTACATGATATTGATGCGTTATCGAGAATGGTCGATCCATCTCTTAAGGGCACATATCCTATTAAGTCGTTATCTCGCTTCGCCGATATTATTTCGTCTTGTGTAATGAGAGAGCCCGAATTTCGACCCCCGATCTCGGAAATTGTACAGGAACTCTTACAAATGGTGTAG | 2316 | 44.95 | MGRSHWNLFMKILIGLLLLFTNPFCFGDTDLRDVAAINALFIALGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGTSLDQFESIISIDLSNNHIGGIIPSALPATLRSFSLSANQFTGSIPSALASLTQLMDLSINNNLLTGAIPDVFQLLNGLNNLDLSGNNLSGQLPPSMADLFSLTTLHLQNNRLSGMLDVLQDLPLSDLNIENNLFSGPIPAKLLGIPNFRKDGNPFNTTIIPSAPALAPSPFAVAPVTAGRPTRQTGAGQPLSSGSSESDGGRSFFSGKRIVWIVIIGAVILVALGACILLSVCLKRRSKHREEMKMVRENADMASKDKPKLTKPSVEVDDMEKGRRETTLKPVDRDGMKDRIMDYTSPKLHENPFASNTSFREDHTESFCDRRGANGKRKDASNMSFRDDHTESSSISIDELLARPPPPPPFSLLSTQEIAKPIVTADVPSRVPKKLNTSSLRVFTIASLQQYTNSFSEDNLLGKGMLGSVYRAELPNGRLLAVKKLDGSSLTRWNDDEFHNLVSDICEIRHDNIVELKGYCAEHGQYLLIYEYCENGTLYEALHVDKEMHQMLSWNVRVRIALGAARALEYLHEACQPPIVHQNFKSANILLDNELKAQLSDSGLASLLDNQSSVRFLPTHGYSAPEFESGTYTYQSDVFSFGVVMLELLTGRKSCDRTLPRGEQYLVRWAIPRLHDIDALSRMVDPSLKGTYPIKSLSRFADIISSCVMREPEFRPPISEIVQELLQMV | 771 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4813485 | 4819134 | + | CmaCh03G004790.1 | Cma03g00479 | 290050 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g00479 | 771 | SUPERFAMILY | L domain-like | 42 | 237 | - | - | |
Cma03g00479 | 771 | MobiDBLite | consensus disorder prediction | 404 | 434 | - | - | |
Cma03g00479 | 771 | Pfam | Leucine rich repeat | 119 | 178 | IPR001611 | GO:0005515 | |
Cma03g00479 | 771 | Gene3D | Ribonuclease Inhibitor | 44 | 253 | IPR032675 | - | |
Cma03g00479 | 771 | MobiDBLite | consensus disorder prediction | 266 | 291 | - | - | |
Cma03g00479 | 771 | MobiDBLite | consensus disorder prediction | 272 | 291 | - | - | |
Cma03g00479 | 771 | MobiDBLite | consensus disorder prediction | 393 | 434 | - | - | |
Cma03g00479 | 771 | Gene3D | Phosphorylase Kinase; domain 1 | 465 | 574 | - | - | |
Cma03g00479 | 771 | SUPERFAMILY | Protein kinase-like (PK-like) | 474 | 767 | IPR011009 | - | |
Cma03g00479 | 771 | Gene3D | Transferase(Phosphotransferase) domain 1 | 575 | 771 | - | - | |
Cma03g00479 | 771 | MobiDBLite | consensus disorder prediction | 342 | 366 | - | - | |
Cma03g00479 | 771 | Pfam | Protein kinase domain | 498 | 765 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma03g00479 | 771 | ProSiteProfiles | Protein kinase domain profile. | 497 | 768 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma03g00479 | 771 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 9 | 771 | - | - | |
Cma03g00479 | 771 | PANTHER | PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 | 9 | 771 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00479 | Cma-Chr3:4813485 | Cma14g01226 | Cma-Chr14:9734658 | 7.69E-172 | dispersed | |
Cma11g01861 | Cma-Chr11:12371461 | Cma03g00479 | Cma-Chr3:4813485 | 0 | wgd | |
Cma19g00972 | Cma-Chr19:8515254 | Cma03g00479 | Cma-Chr3:4813485 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68407 | PF00069 | Pkinase | 1.40E-37 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g00479 | - | - | cmo:103484543 | 1187.94 |