Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00479 ATGGGTCGTTCTCATTGGAATTTGTTCATGAAGATCTTAATTGGGTTGCTCTTGCTCTTCACCAACCCTTTTTGCTTTGGAGATACTGACCTCCGTGATGTTGCTGCAATCAATGCGTTATTTATTGCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGAGAGAAGTGGCAAGGGGTTGAGTGTGTGTTCTCAAATATAACAGCGATACAACTCAGTGGTTTGAATTTGGGAGGAGAGCTAGGCACTAGCTTAGACCAATTTGAGTCAATAATATCAATAGATCTTAGCAATAACCATATTGGAGGGATTATTCCATCTGCATTGCCTGCTACACTAAGAAGTTTTTCTTTATCAGCTAATCAGTTTACTGGAAGCATTCCCTCTGCACTTGCCTCTCTAACACAATTGATGGACCTGTCAATAAACAACAACCTTCTTACCGGGGCAATACCCGATGTCTTCCAGCTGCTTAATGGCTTGAACAACTTGGACTTGTCGGGCAACAACTTGAGCGGTCAGCTGCCTCCCTCCATGGCGGATTTGTTCTCCCTTACTACATTGCACTTGCAGAACAATCGACTTTCTGGGATGCTCGACGTTCTACAGGATCTTCCGTTGTCGGATTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGATGGAAACCCTTTTAATACTACCATAATTCCATCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTGGCGCCTGTTACTGCGGGACGACCAACCAGACAGACGGGTGCGGGTCAGCCATTGTCATCAGGGAGTTCTGAATCCGATGGAGGAAGGAGTTTTTTCTCTGGTAAGCGGATCGTTTGGATTGTTATTATTGGTGCAGTAATATTAGTGGCATTGGGAGCTTGTATTCTGTTATCGGTATGCTTGAAAAGAAGAAGCAAGCATCGAGAAGAGATGAAGATGGTTCGTGAAAATGCTGATATGGCTTCTAAAGATAAGCCGAAACTCACGAAGCCTTCGGTTGAAGTTGATGACATGGAGAAAGGTCGAAGGGAGACCACTCTTAAGCCAGTTGATAGAGACGGGATGAAGGATAGAATAATGGATTATACCTCCCCAAAGCTACATGAAAACCCATTTGCCTCCAATACGAGCTTTCGTGAAGACCATACGGAGAGTTTTTGTGATAGACGGGGCGCAAATGGGAAGAGAAAAGATGCATCCAATATGAGTTTCCGTGACGACCATACGGAGAGTTCGAGCATAAGCATAGATGAGTTGCTTGCACGACCTCCTCCTCCCCCTCCATTTTCGCTCCTTTCGACTCAGGAGATTGCAAAACCAATTGTGACAGCCGACGTACCTAGTCGAGTACCTAAAAAACTAAACACGAGTTCTTTAAGAGTTTTCACGATCGCGTCGCTTCAGCAGTATACTAATAGTTTCTCTGAAGATAATCTTCTTGGGAAAGGCATGCTTGGTAGTGTCTATAGAGCTGAACTACCAAATGGAAGGCTTTTGGCCGTTAAAAAACTGGATGGATCCTCTTTGACTCGTTGGAACGACGATGAATTTCACAACCTCGTGTCTGATATATGCGAAATTCGGCACGATAACATTGTGGAGCTTAAGGGCTATTGTGCTGAGCATGGACAATACCTACTCATTTACGAGTATTGCGAAAATGGCACACTCTATGAAGCACTCCACGTCGACAAGGAGATGCATCAAATGCTTTCGTGGAACGTGCGCGTGAGGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTACATGAGGCCTGTCAGCCGCCAATTGTGCACCAAAATTTTAAGTCTGCTAACATTCTCCTGGACAATGAGCTAAAAGCACAGCTCTCTGACTCTGGCCTAGCTTCACTGCTTGATAATCAGTCGTCTGTACGATTCCTCCCAACTCATGGTTATAGTGCTCCGGAATTTGAGTCGGGAACTTACACGTACCAAAGCGATGTTTTTAGCTTTGGAGTTGTAATGCTAGAGCTTCTCACTGGTCGGAAGTCGTGTGATCGAACACTGCCTCGAGGAGAGCAATATCTTGTTCGTTGGGCTATTCCAAGGCTACATGATATTGATGCGTTATCGAGAATGGTCGATCCATCTCTTAAGGGCACATATCCTATTAAGTCGTTATCTCGCTTCGCCGATATTATTTCGTCTTGTGTAATGAGAGAGCCCGAATTTCGACCCCCGATCTCGGAAATTGTACAGGAACTCTTACAAATGGTGTAG 2316 44.95 MGRSHWNLFMKILIGLLLLFTNPFCFGDTDLRDVAAINALFIALGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGTSLDQFESIISIDLSNNHIGGIIPSALPATLRSFSLSANQFTGSIPSALASLTQLMDLSINNNLLTGAIPDVFQLLNGLNNLDLSGNNLSGQLPPSMADLFSLTTLHLQNNRLSGMLDVLQDLPLSDLNIENNLFSGPIPAKLLGIPNFRKDGNPFNTTIIPSAPALAPSPFAVAPVTAGRPTRQTGAGQPLSSGSSESDGGRSFFSGKRIVWIVIIGAVILVALGACILLSVCLKRRSKHREEMKMVRENADMASKDKPKLTKPSVEVDDMEKGRRETTLKPVDRDGMKDRIMDYTSPKLHENPFASNTSFREDHTESFCDRRGANGKRKDASNMSFRDDHTESSSISIDELLARPPPPPPFSLLSTQEIAKPIVTADVPSRVPKKLNTSSLRVFTIASLQQYTNSFSEDNLLGKGMLGSVYRAELPNGRLLAVKKLDGSSLTRWNDDEFHNLVSDICEIRHDNIVELKGYCAEHGQYLLIYEYCENGTLYEALHVDKEMHQMLSWNVRVRIALGAARALEYLHEACQPPIVHQNFKSANILLDNELKAQLSDSGLASLLDNQSSVRFLPTHGYSAPEFESGTYTYQSDVFSFGVVMLELLTGRKSCDRTLPRGEQYLVRWAIPRLHDIDALSRMVDPSLKGTYPIKSLSRFADIISSCVMREPEFRPPISEIVQELLQMV 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4813485 4819134 + CmaCh03G004790.1 Cma03g00479 290050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00479 771 SUPERFAMILY L domain-like 42 237 - -
Cma03g00479 771 MobiDBLite consensus disorder prediction 404 434 - -
Cma03g00479 771 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515
Cma03g00479 771 Gene3D Ribonuclease Inhibitor 44 253 IPR032675 -
Cma03g00479 771 MobiDBLite consensus disorder prediction 266 291 - -
Cma03g00479 771 MobiDBLite consensus disorder prediction 272 291 - -
Cma03g00479 771 MobiDBLite consensus disorder prediction 393 434 - -
Cma03g00479 771 Gene3D Phosphorylase Kinase; domain 1 465 574 - -
Cma03g00479 771 SUPERFAMILY Protein kinase-like (PK-like) 474 767 IPR011009 -
Cma03g00479 771 Gene3D Transferase(Phosphotransferase) domain 1 575 771 - -
Cma03g00479 771 MobiDBLite consensus disorder prediction 342 366 - -
Cma03g00479 771 Pfam Protein kinase domain 498 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00479 771 ProSiteProfiles Protein kinase domain profile. 497 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00479 771 PANTHER LEUCINE RICH REPEAT KINASE 2 9 771 - -
Cma03g00479 771 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 9 771 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00479 Cma-Chr3:4813485 Cma14g01226 Cma-Chr14:9734658 7.69E-172 dispersed
Cma11g01861 Cma-Chr11:12371461 Cma03g00479 Cma-Chr3:4813485 0 wgd
Cma19g00972 Cma-Chr19:8515254 Cma03g00479 Cma-Chr3:4813485 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68407 PF00069 Pkinase 1.40E-37 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00479 - - cmo:103484543 1187.94