Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00479 ATGGGTCGTTCTCATTGGAATTTGTTCATGAAGATCTTAATTGGGTTGCTCTTGCTCTTCACCAACCCTTTTTGCTTTGGAGATACTGACCTCCGTGATGTTGCTGCAATCAATGCGTTATTTATTGCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGAGAGAAGTGGCAAGGGGTTGAGTGTGTGTTCTCAAATATAACAGCGATACAACTCAGTGGTTTGAATTTGGGAGGAGAGCTAGGCACTAGCTTAGACCAATTTGAGTCAATAATATCAATAGATCTTAGCAATAACCATATTGGAGGGATTATTCCATCTGCATTGCCTGCTACACTAAGAAGTTTTTCTTTATCAGCTAATCAGTTTACTGGAAGCATTCCCTCTGCACTTGCCTCTCTAACACAATTGATGGACCTGTCAATAAACAACAACCTTCTTACCGGGGCAATACCCGATGTCTTCCAGCTGCTTAATGGCTTGAACAACTTGGACTTGTCGGGCAACAACTTGAGCGGTCAGCTGCCTCCCTCCATGGCGGATTTGTTCTCCCTTACTACATTGCACTTGCAGAACAATCGACTTTCTGGGATGCTCGACGTTCTACAGGATCTTCCGTTGTCGGATTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGATGGAAACCCTTTTAATACTACCATAATTCCATCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTGGCGCCTGTTACTGCGGGACGACCAACCAGACAGACGGGTGCGGGTCAGCCATTGTCATCAGGGAGTTCTGAATCCGATGGAGGAAGGAGTTTTTTCTCTGGTAAGCGGATCGTTTGGATTGTTATTATTGGTGCAGTAATATTAGTGGCATTGGGAGCTTGTATTCTGTTATCGGTATGCTTGAAAAGAAGAAGCAAGCATCGAGAAGAGATGAAGATGGTTCGTGAAAATGCTGATATGGCTTCTAAAGATAAGCCGAAACTCACGAAGCCTTCGGTTGAAGTTGATGACATGGAGAAAGGTCGAAGGGAGACCACTCTTAAGCCAGTTGATAGAGACGGGATGAAGGATAGAATAATGGATTATACCTCCCCAAAGCTACATGAAAACCCATTTGCCTCCAATACGAGCTTTCGTGAAGACCATACGGAGAGTTTTTGTGATAGACGGGGCGCAAATGGGAAGAGAAAAGATGCATCCAATATGAGTTTCCGTGACGACCATACGGAGAGTTCGAGCATAAGCATAGATGAGTTGCTTGCACGACCTCCTCCTCCCCCTCCATTTTCGCTCCTTTCGACTCAGGAGATTGCAAAACCAATTGTGACAGCCGACGTACCTAGTCGAGTACCTAAAAAACTAAACACGAGTTCTTTAAGAGTTTTCACGATCGCGTCGCTTCAGCAGTATACTAATAGTTTCTCTGAAGATAATCTTCTTGGGAAAGGCATGCTTGGTAGTGTCTATAGAGCTGAACTACCAAATGGAAGGCTTTTGGCCGTTAAAAAACTGGATGGATCCTCTTTGACTCGTTGGAACGACGATGAATTTCACAACCTCGTGTCTGATATATGCGAAATTCGGCACGATAACATTGTGGAGCTTAAGGGCTATTGTGCTGAGCATGGACAATACCTACTCATTTACGAGTATTGCGAAAATGGCACACTCTATGAAGCACTCCACGTCGACAAGGAGATGCATCAAATGCTTTCGTGGAACGTGCGCGTGAGGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTACATGAGGCCTGTCAGCCGCCAATTGTGCACCAAAATTTTAAGTCTGCTAACATTCTCCTGGACAATGAGCTAAAAGCACAGCTCTCTGACTCTGGCCTAGCTTCACTGCTTGATAATCAGTCGTCTGTACGATTCCTCCCAACTCATGGTTATAGTGCTCCGGAATTTGAGTCGGGAACTTACACGTACCAAAGCGATGTTTTTAGCTTTGGAGTTGTAATGCTAGAGCTTCTCACTGGTCGGAAGTCGTGTGATCGAACACTGCCTCGAGGAGAGCAATATCTTGTTCGTTGGGCTATTCCAAGGCTACATGATATTGATGCGTTATCGAGAATGGTCGATCCATCTCTTAAGGGCACATATCCTATTAAGTCGTTATCTCGCTTCGCCGATATTATTTCGTCTTGTGTAATGAGAGAGCCCGAATTTCGACCCCCGATCTCGGAAATTGTACAGGAACTCTTACAAATGGTGTAG 2316 44.95 MGRSHWNLFMKILIGLLLLFTNPFCFGDTDLRDVAAINALFIALGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGTSLDQFESIISIDLSNNHIGGIIPSALPATLRSFSLSANQFTGSIPSALASLTQLMDLSINNNLLTGAIPDVFQLLNGLNNLDLSGNNLSGQLPPSMADLFSLTTLHLQNNRLSGMLDVLQDLPLSDLNIENNLFSGPIPAKLLGIPNFRKDGNPFNTTIIPSAPALAPSPFAVAPVTAGRPTRQTGAGQPLSSGSSESDGGRSFFSGKRIVWIVIIGAVILVALGACILLSVCLKRRSKHREEMKMVRENADMASKDKPKLTKPSVEVDDMEKGRRETTLKPVDRDGMKDRIMDYTSPKLHENPFASNTSFREDHTESFCDRRGANGKRKDASNMSFRDDHTESSSISIDELLARPPPPPPFSLLSTQEIAKPIVTADVPSRVPKKLNTSSLRVFTIASLQQYTNSFSEDNLLGKGMLGSVYRAELPNGRLLAVKKLDGSSLTRWNDDEFHNLVSDICEIRHDNIVELKGYCAEHGQYLLIYEYCENGTLYEALHVDKEMHQMLSWNVRVRIALGAARALEYLHEACQPPIVHQNFKSANILLDNELKAQLSDSGLASLLDNQSSVRFLPTHGYSAPEFESGTYTYQSDVFSFGVVMLELLTGRKSCDRTLPRGEQYLVRWAIPRLHDIDALSRMVDPSLKGTYPIKSLSRFADIISSCVMREPEFRPPISEIVQELLQMV 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4813485 4819134 + CmaCh03G004790.1 Cma03g00479 290050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00479 771 SUPERFAMILY L domain-like 42 237 - -
Cma03g00479 771 MobiDBLite consensus disorder prediction 404 434 - -
Cma03g00479 771 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515
Cma03g00479 771 Gene3D Ribonuclease Inhibitor 44 253 IPR032675 -
Cma03g00479 771 MobiDBLite consensus disorder prediction 266 291 - -
Cma03g00479 771 MobiDBLite consensus disorder prediction 272 291 - -
Cma03g00479 771 MobiDBLite consensus disorder prediction 393 434 - -
Cma03g00479 771 Gene3D Phosphorylase Kinase; domain 1 465 574 - -
Cma03g00479 771 SUPERFAMILY Protein kinase-like (PK-like) 474 767 IPR011009 -
Cma03g00479 771 Gene3D Transferase(Phosphotransferase) domain 1 575 771 - -
Cma03g00479 771 MobiDBLite consensus disorder prediction 342 366 - -
Cma03g00479 771 Pfam Protein kinase domain 498 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00479 771 ProSiteProfiles Protein kinase domain profile. 497 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00479 771 PANTHER LEUCINE RICH REPEAT KINASE 2 9 771 - -
Cma03g00479 771 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 9 771 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00479 - - - cmo:103484543 1187.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00479 Cma-Chr3:4813485 Cma14g01226 Cma-Chr14:9734658 7.69E-172 dispersed
Cma11g01861 Cma-Chr11:12371461 Cma03g00479 Cma-Chr3:4813485 0 wgd
Cma19g00972 Cma-Chr19:8515254 Cma03g00479 Cma-Chr3:4813485 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma19g00972 CST 34 762 Strubbelig Receptor Gene Family AT4G03390 61.2 6.8e-205 711.4
Cma11g01861 CST 103 821 Strubbelig Receptor Gene Family AT4G03390 60.3 5.8e-188 655.2
Cma03g00479 . 29 771 Strubbelig Receptor Gene Family AT4G03390 52.3 1.3e-155 547.7
Cma17g00644 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.5 6.6e-91 332.8
Cma08g00837 CCT,CST 425 719 Strubbelig Receptor Gene Family AT4G03390 57.8 1.2e-89 328.6
Cma14g00431 . 34 743 Strubbelig Receptor Gene Family AT5G06820 53.0 1.0e-178 624.4
Cma04g00965 . 10 695 Strubbelig Receptor Gene Family AT1G78980 59.0 2.4e-185 646.4
Cma15g01427 . 10 653 Strubbelig Receptor Gene Family AT1G78980 50.4 2.5e-166 583.2
Cma14g01226 . 23 718 Strubbelig Receptor Gene Family AT1G78980 51.6 1.6e-152 537.3
Cma01g00022 CCT 574 1255 Strubbelig Receptor Gene Family AT1G78980 52.0 3.4e-147 519.6
Cma08g00837 CCT,CST 43 741 Strubbelig Receptor Gene Family AT1G78980 50.4 2.1e-128 457.2
Cma04g00965 . 5 673 Strubbelig Receptor Gene Family AT3G13065 52.8 8.1e-141 498.4
Cma08g00837 CCT,CST 37 717 Strubbelig Receptor Gene Family AT3G13065 50.6 4.6e-104 376.3
Cma17g00644 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.3 9.0e-100 362.1
Cma18g00568 . 383 676 Strubbelig Receptor Gene Family AT1G11130 54.1 7.4e-86 315.8
Cma13g00416 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.1 4.8e-85 313.2
Cma17g00644 CCT,CST 375 685 Strubbelig Receptor Gene Family AT1G11130 50.8 2.0e-83 307.8
Cma08g00837 CCT,CST 429 717 Strubbelig Receptor Gene Family AT1G11130 52.9 4.5e-83 306.6
Cma14g00431 . 34 743 Strubbelig Receptor Gene Family AT5G06820 53.0 1.0e-178 624.4
Cma19g00972 CST 34 762 Strubbelig Receptor Gene Family AT4G03390 61.2 6.8e-205 711.4
Cma11g01861 CST 103 821 Strubbelig Receptor Gene Family AT4G03390 60.3 5.8e-188 655.2
Cma03g00479 . 29 771 Strubbelig Receptor Gene Family AT4G03390 52.3 1.3e-155 547.7
Cma17g00644 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.5 6.6e-91 332.8
Cma08g00837 CCT,CST 425 719 Strubbelig Receptor Gene Family AT4G03390 57.8 1.2e-89 328.6
Cma04g00965 . 5 673 Strubbelig Receptor Gene Family AT3G13065 52.8 8.1e-141 498.4
Cma08g00837 CCT,CST 37 717 Strubbelig Receptor Gene Family AT3G13065 50.6 4.6e-104 376.3
Cma17g00644 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.3 9.0e-100 362.1
Cma04g00965 . 10 695 Strubbelig Receptor Gene Family AT1G78980 59.0 2.4e-185 646.4
Cma15g01427 . 10 653 Strubbelig Receptor Gene Family AT1G78980 50.4 2.5e-166 583.2
Cma14g01226 . 23 718 Strubbelig Receptor Gene Family AT1G78980 51.6 1.6e-152 537.3
Cma01g00022 CCT 574 1255 Strubbelig Receptor Gene Family AT1G78980 52.0 3.4e-147 519.6
Cma08g00837 CCT,CST 43 741 Strubbelig Receptor Gene Family AT1G78980 50.4 2.1e-128 457.2
Cma14g01226 . 1 718 Strubbelig Receptor Gene Family AT1G53730 60.1 1.2e-211 733.8
Cma01g00022 CCT 526 1249 Strubbelig Receptor Gene Family AT1G53730 60.6 5.0e-210 728.4
Cma08g00837 CCT,CST 31 730 Strubbelig Receptor Gene Family AT1G53730 59.1 1.6e-179 627.1
Cma17g00644 CCT,CST 1 698 Strubbelig Receptor Gene Family AT1G53730 59.7 1.5e-177 620.5
Cma13g00416 . 4 689 Strubbelig Receptor Gene Family AT1G53730 51.6 6.9e-135 478.8
Cma11g01861 CST 518 810 Strubbelig Receptor Gene Family AT1G53730 56.3 2.9e-88 323.9
Cma14g01226 . 11 713 Strubbelig Receptor Gene Family AT3G14350 51.8 1.8e-180 630.2
Cma01g00022 CCT 536 1253 Strubbelig Receptor Gene Family AT3G14350 50.6 7.5e-179 624.8
Cma08g00837 CCT,CST 39 728 Strubbelig Receptor Gene Family AT3G14350 53.5 7.0e-161 565.1
Cma17g00644 CCT,CST 6 702 Strubbelig Receptor Gene Family AT3G14350 53.0 1.4e-156 550.8
Cma11g01861 CST 517 818 Strubbelig Receptor Gene Family AT3G14350 51.6 1.8e-76 284.6
Cma18g00568 . 332 706 Strubbelig Receptor Gene Family AT4G22130 81.6 2.2e-173 606.3
Cma13g00416 . 344 711 Strubbelig Receptor Gene Family AT4G22130 80.2 4.4e-169 592.0
Cma14g01226 . 402 725 Strubbelig Receptor Gene Family AT4G22130 63.2 2.1e-118 423.7
Cma01g00022 CCT 943 1265 Strubbelig Receptor Gene Family AT4G22130 63.4 4.6e-118 422.5
Cma17g00644 CCT,CST 391 707 Strubbelig Receptor Gene Family AT4G22130 64.9 6.0e-118 422.2
Cma08g00837 CCT,CST 423 732 Strubbelig Receptor Gene Family AT4G22130 66.0 3.9e-117 419.5
Cma11g01861 CST 486 821 Strubbelig Receptor Gene Family AT4G22130 55.6 4.8e-107 386.0
Cma19g00972 CST 459 754 Strubbelig Receptor Gene Family AT4G22130 60.9 1.5e-105 380.9
Cma04g00965 . 378 695 Strubbelig Receptor Gene Family AT4G22130 55.4 4.3e-100 362.8
Cma03g00479 . 485 771 Strubbelig Receptor Gene Family AT4G22130 60.5 1.4e-98 357.8
Cma14g00431 . 404 726 Strubbelig Receptor Gene Family AT4G22130 52.0 2.5e-92 337.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007627 1 3 1 0 1 0 2 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 0 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68407 PF00069 Pkinase 1.40E-37 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00479 Cma_Chr03 FPKM 10.962399 11.323096 7.278888 7.923866 19.769165 19.76045 21.534468 28.793779 26.780619 28.204239