Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00504 ATGGGTGTTAATTGCAGAAGCGTTGTTGGGTTTTGTCAATTGTTAGTCATTTCAGCCTTCCTCTGTTCTTCTCCTCTGTTTTGCGATGCTGCAGATTCAATTGCGAGGGGTAGAGAGCTAAGAGATAGTACTAACGAAACCCTCATATCCTTGAATGAGTCCTACGAACTGGGATTCTTCAGCCCCACTAATTCTTCATCACGGTATGTCGGAATATGGTATCATAAGATCGAGGAACTGTCTGTTATTTGGGTTGCGAATAGACAGACGCCACTTTTTAATAGAGATGGGATTTTGAAAATCGGAGATGACGGGAACTTGGTCGTTCTGGACAGTAACAACGCCTCTGTTTGGACAAGCAATATCACAGCGAATGCTTCTGATCCCAGAAATTTAACTCTTCATAACAGTGGAGAATTGATTCTCTCGAGCGGAGATGACTCGTCGAAAGTTCATTGGAGCAGCTTCATAAACCCCACAGATACGTTTCTTCCGAATATGGAGGTGAAAGTGAACGCAGATATGGGCGAGAAACGAATGTTTATGTCGTGGAAATCAGAGACAAATCCGGCCGTCGGGAATTTTTGTCTGGGTGTGGATCCTCGTGGAGCCGTCCAGATTATCGTTTGGAATGGAGATAAACGATGGTGGAGAAGCGGCCACTGGGATAGGCAGATTTTTTCTGGGATTCCAACTATGCGTTCTACGACGTTGTACGGCTTTAAGGTTCTTCCTGACAGTGAAAACAACATTAGCGTAACTTTTCATGCACTGAATGATTCCGATAAGCTGAAATTTCAAATCCGGTGGGATGGAAAAGAAGCACAGCAACGATGGAATGAAGTAAGTCGCAAATGGGAAACGATTCGTTTACTTCCTTCTCACGATTGCGATTTCTATAACTTTTGTGGGGATTTTGGGGTATGTTCTGAAACGAGTCGTGTTAAGTGTAGCTGCCCTCAAGGATTTACACCCAAAAACATAGATAGATGGGATGGTTGTGAGAGGAGGACTCCATTGCTTCAACAGAGAATGAACAGTAGTCAAAATGGAACTATTGAAGACAGTGAAGAAGATGGATTTGTGGCCGTACCATTTGTGAAATTGCCGGATTTCATAAGTGGAGTATTTGTGGTGGATTCATGTAGAGATAGATGTTTGAACAGTTCTTCGTGTGTTGCATATTCGGATGCTCCTGGAATTGGGTGCATAATTTGGGATGGACCTTTAATTGATATTCAGAAATTTGATGGCGTTGGGAATACTTTAAACATTCGTCTGGCTCATTCAGATTTGATATTCGGAGATAGCGAGGGAAAATTGTCGACCGGTGTGATCGTATCGATATGTTTAGGAGCAGCAGCTGCCATAGCCATATTAGCATTGCTGATATGGAAATTCAGAGGCAAAATGGAAGGTTCACCGGCTGCTGCTTCAAGTAAACCTCAGAACAAAGCTGAAGTACCAATGTTTGATCTGAGCAAGAGTGGAGAGTTTTCAGTACAGGTTTCAGGGCCATACGAATTAGGCATAGAAGGCGAACAATTGAATGGACCAGATTTGCCCATGTTCAATTTCAACTGTGTAGCTGTGGCTACTGATAACTTTTCTGAGGAAAACAAGCTTGGGCAGGGCGGTTTCGGCCCTGTATACAAGGGAAAGCTTCCATGTGGACAAGAAATTGCTGTGAAGAGGCTCTCAGTCCGGTCTGGCCAAGGTCTAGAAGAGTTTAAGAATGAGATTATACTGATAGGAAAGTTGCAGCATCGAAACCTCGTCAGGCTGTTGGGCTACTGCATTCAAGGAGAGGACAAGATGCTGCTCTATGAATATATGCCAAACAAAAGCTTGGATTGGTTTCTTTTCGATCCGAACAAGCAGGCGCTACTCGATTGGAAAAAACGGCTGTCGATCGTAGGGGGAATAGCGCGAGGGCTACTATACCTTCATAGAGATTCGAGACTTCTTATTATTCATAGAGATTTGAAAGCTAGTAACATTTTGTTAGACGAAGACATGAATCCAAAGATATCAGACTTTGGCATGGCTAGAATATTCGGTGGAAACCAAAACGAGGCCACAAATACCATTCGAGTTGTTGGGACATACGGTTACATGGCTCCAGAGTATGCAATGGAAGGTTTATTTTCGGTGAAATCGGATGTGTATAGTTTTGGTGTATTATTGTTGGAATTAATCTGTGGTCGGAGGAACACTAGCTTTCGGTCAACTGAATACTTAACGCTTATTAGCTATGCTTGGAAACTTTGGAACGAAGGAAGAGCGATCGAACTTCTCGACCCATCAATTCGCGACACATCGCCCGAGAATGAAGTATTGAAATGCATACATGTAGCAATGTTATGTGTACAAGACTCTCCTGCATATAGACCAACACTGCAATCCTTGGTGCTAATGCTGGAGAGTGAATCTATATCACTGCCACAGCCAAGGCAGCCCACCTATACTTCCACAAGAGCCTCGATCGATACGGACTTGTTTACAGAAGGGCACGACATTGTATCGTCGAATGATGTAACGGTAACAATGCTGGATGGTAGATAG 2565 43.39 MGVNCRSVVGFCQLLVISAFLCSSPLFCDAADSIARGRELRDSTNETLISLNESYELGFFSPTNSSSRYVGIWYHKIEELSVIWVANRQTPLFNRDGILKIGDDGNLVVLDSNNASVWTSNITANASDPRNLTLHNSGELILSSGDDSSKVHWSSFINPTDTFLPNMEVKVNADMGEKRMFMSWKSETNPAVGNFCLGVDPRGAVQIIVWNGDKRWWRSGHWDRQIFSGIPTMRSTTLYGFKVLPDSENNISVTFHALNDSDKLKFQIRWDGKEAQQRWNEVSRKWETIRLLPSHDCDFYNFCGDFGVCSETSRVKCSCPQGFTPKNIDRWDGCERRTPLLQQRMNSSQNGTIEDSEEDGFVAVPFVKLPDFISGVFVVDSCRDRCLNSSSCVAYSDAPGIGCIIWDGPLIDIQKFDGVGNTLNIRLAHSDLIFGDSEGKLSTGVIVSICLGAAAAIAILALLIWKFRGKMEGSPAAASSKPQNKAEVPMFDLSKSGEFSVQVSGPYELGIEGEQLNGPDLPMFNFNCVAVATDNFSEENKLGQGGFGPVYKGKLPCGQEIAVKRLSVRSGQGLEEFKNEIILIGKLQHRNLVRLLGYCIQGEDKMLLYEYMPNKSLDWFLFDPNKQALLDWKKRLSIVGGIARGLLYLHRDSRLLIIHRDLKASNILLDEDMNPKISDFGMARIFGGNQNEATNTIRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLELICGRRNTSFRSTEYLTLISYAWKLWNEGRAIELLDPSIRDTSPENEVLKCIHVAMLCVQDSPAYRPTLQSLVLMLESESISLPQPRQPTYTSTRASIDTDLFTEGHDIVSSNDVTVTMLDGR 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4936160 4939868 + CmaCh03G005040.1 Cma03g00504 290075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00504 854 Pfam Domain of unknown function (DUF3403) 809 854 IPR021820 GO:0004674
Cma03g00504 854 Pfam Protein tyrosine and serine/threonine kinase 539 805 IPR001245 GO:0004672|GO:0006468
Cma03g00504 854 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 190 IPR036426 -
Cma03g00504 854 Gene3D Transferase(Phosphotransferase) domain 1 612 819 - -
Cma03g00504 854 ProSiteProfiles Bulb-type lectin domain profile. 31 155 IPR001480 -
Cma03g00504 854 SMART ntp_6 356 427 IPR003609 -
Cma03g00504 854 Pfam S-locus glycoprotein domain 217 327 IPR000858 GO:0048544
Cma03g00504 854 SMART serkin_6 536 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00504 854 Gene3D - 27 156 IPR036426 -
Cma03g00504 854 CDD PAN_AP_plant 354 428 - -
Cma03g00504 854 Pfam PAN-like domain 356 413 IPR003609 -
Cma03g00504 854 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672|GO:0006468
Cma03g00504 854 SUPERFAMILY Protein kinase-like (PK-like) 522 830 IPR011009 -
Cma03g00504 854 PIRSF SRK 5 854 IPR024171 GO:0004674
Cma03g00504 854 SMART blect_4 39 159 IPR001480 -
Cma03g00504 854 Gene3D Phosphorylase Kinase; domain 1 511 611 - -
Cma03g00504 854 ProSiteProfiles Protein kinase domain profile. 536 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00504 854 CDD B_lectin 43 159 IPR001480 -
Cma03g00504 854 CDD STKc_IRAK 542 808 - -
Cma03g00504 854 ProSiteProfiles PAN/Apple domain profile. 356 428 IPR003609 -
Cma03g00504 854 Pfam D-mannose binding lectin 82 185 IPR001480 -
Cma03g00504 854 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 13 854 - -
Cma03g00504 854 ProSiteProfiles EGF-like domain profile. 293 329 IPR000742 -
Cma03g00504 854 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 13 854 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00504 Cma-Chr3:4936160 Cma13g00691 Cma-Chr13:6304253 0 dispersed
Cma01g01169 Cma-Chr1:8503318 Cma03g00504 Cma-Chr3:4936160 2.52E-136 wgd
Cma13g00687 Cma-Chr13:6295714 Cma03g00504 Cma-Chr3:4936160 3.36E-93 wgd
Cma18g00332 Cma-Chr18:1779036 Cma03g00504 Cma-Chr3:4936160 0 wgd
Cma19g00948 Cma-Chr19:8421147 Cma03g00504 Cma-Chr3:4936160 8.63E-58 wgd
Cma20g00649 Cma-Chr20:3000088 Cma03g00504 Cma-Chr3:4936160 9.78E-42 wgd
Cma03g00504 Cma-Chr3:4936160 Cma07g00288 Cma-Chr7:1281330 0 wgd
Cma03g00504 Cma-Chr3:4936160 Cma09g00906 Cma-Chr9:4507821 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68408 PF07714 PK_Tyr_Ser-Thr 3.60E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00504 - - csv:101207147 1498.8