Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00505 ATGGCGGCTCCATATCCAGATGATTTCAAGTGCCCTATTTCTCTGGAGATAATGTCCGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGTTCCTCAATCCAACGGTGGCTCGATGCCGGTCACCGGACTTGCCCAATCACCCAATTGCCCCTTCCTCAAAACCCTAACCTAATCCCTAACCATGCTCTCAGAAGCTTAATTTCAAATTTCAACCCTGTTTCCCTGTCCAAGCCATTTCTCCCTCATCCCTCGCCCCAAACCCTAATCTCGATTCTCATATCTCCTTCTTCCTCCCTCGATTCCAAGCTCGATTGCCTCAATCAACTCGCGAGGGTTTCGAAGCGCGATTCCGCTATGCGTCGAAGATTGACCGAGTCCGGGGCCGTCTCGGCTGTTCTTAAATGCGTTGGTTCTGACGATCCGAGCCTTCAAGAGAAGGCTCTGTCGCTGCTGCTGAATCTTAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAAGGGGCTATTGGCCACACCGTGGCTGCTCTTCAAGCGAGGTCCCCCGATTGCAGAGCCGTTGCGGCCACGATGCTGACGAGCTTGGCGGTTGTGGAGGTTAACAAGGCTACAATTGGGGCATATCCTCATGCGGTTCGCTCTCTGGTTTGTCTCTTACGGAACGGCAACTACAGAGAGCAGAAGGAAGCTGCAACTGCGCTTTACGCCATTTGTTCATTCCCCAGGAACCGTCTGCGGGCCGTGGAATGTGGGGTTGTTCCCATTTTGCTCAAAATTGCCAATTCTGGGCTGGATAGAGCAGTGGAGGTTCTGGGGCTTTTGGCCAAGTGCAGGGAAGGTCGCGAAGAGATGCAACGGTTCAAGGGATGTGTGGAGATTTTGGGTTGTGTTTTGAGAAATGGAGCCCCAAGAGGGGTTCAATATTCTCTTCTAACTCTGAGTTCCCTGTGCTGCCACTGCGAGCGACTGTGCGTGGAGGCCAGAAGAGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGACAATAATGAAAAGATCAGAGCAAATGCTGCAAATTTGATTCATATACTGCGCGGAAACAATACATGA 1098 51.0 MAAPYPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPQNPNLIPNHALRSLISNFNPVSLSKPFLPHPSPQTLISILISPSSSLDSKLDCLNQLARVSKRDSAMRRRLTESGAVSAVLKCVGSDDPSLQEKALSLLLNLSLDDDNKVGLVAEGAIGHTVAALQARSPDCRAVAATMLTSLAVVEVNKATIGAYPHAVRSLVCLLRNGNYREQKEAATALYAICSFPRNRLRAVECGVVPILLKIANSGLDRAVEVLGLLAKCREGREEMQRFKGCVEILGCVLRNGAPRGVQYSLLTLSSLCCHCERLCVEARREGVLGICMTLIDDNNEKIRANAANLIHILRGNNT 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4940307 4941404 + CmaCh03G005050.1 Cma03g00505 290076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00505 365 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 361 - -
Cma03g00505 365 Gene3D - 270 365 IPR011989 -
Cma03g00505 365 Gene3D - 89 205 IPR011989 -
Cma03g00505 365 Gene3D - 206 269 IPR011989 -
Cma03g00505 365 SUPERFAMILY ARM repeat 88 360 IPR016024 -
Cma03g00505 365 PANTHER U BOX DOMAIN-CONTAINING 1 361 - -
Cma03g00505 365 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Cma03g00505 365 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 171 IPR000225 GO:0005515
Cma03g00505 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Cma03g00505 365 SMART arm_5 159 199 IPR000225 GO:0005515
Cma03g00505 365 SMART arm_5 118 158 IPR000225 GO:0005515
Cma03g00505 365 SMART arm_5 203 241 IPR000225 GO:0005515
Cma03g00505 365 SUPERFAMILY RING/U-box 3 72 - -
Cma03g00505 365 CDD RING-Ubox_PUB 9 50 IPR045210 -
Cma03g00505 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 76 IPR013083 -
Cma03g00505 365 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00505 Cma-Chr3:4940307 Cma01g00596 Cma-Chr1:3130763 1.16E-58 dispersed
Cma03g00505 Cma-Chr3:4940307 Cma07g00289 Cma-Chr7:1286470 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00505 - - csv:101213883 601.282