Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00516 ATGATTCATTTCTTCCCTCAAACACCGTCCTTGCCTTCAATTTTACTACTGATTTCAATCTCTGGACTAATAGTCCCTTGTTGTAGCCAACGCTATTTAAACTGCTCAGGAACCAACACGGCTCGCCCAAATCTGAATTCTGGCATCAACTTCCTACTGAATTCCTTGACCTCTCGAGCTTCCTCTCACACTTTTTACACTGAGACCTATAATGGAATCCATGGCCTCTTTCTCTGCCGAGGGGATATTCCTAATGAGGCCTGTCATACCTGCATCGAAGGAGCAAGTCAACAAATCAAAGTCACCTGCTCATCACAAACAAATGTTCCAAGAATAGTGTTATATAATAGTCTGAACCAATCTACTATTGAAGACCGTGATTTCATTGATCTTGCATTGGTGTCTAATTTAGCACAAGATGCTGCAAATGCAAATATGATGTTCAAGGAAGGTGAGGTAAATGTGGGTGGTGTGGATCAGAGATTTGGACTGGCACAGTGTACAAGAGATATCATCAAGCGTGATTGTGAGGTCTGTTTGACAAATTTGGTGACTTTTGCAAAGGGATGTTGCTTAAGACAAAGAGGGTGGCGAGTTTTAGCTCCCAATTGTAATTTAAGGGTTGAGGCCTTTCAGTTTTATGGGATACCAAGACCTCCATCCTTGAATCTTGATGAAGAAGGAGGCAACAGAACAAGGATCATTGTCATCAGCATATCAACAGTTGCAGCAGCGGCAGTTCTGCTAGGAATGATTTATGCCTCATTTTTATGGAGAAACAAAAGGGAGAGGGATAGAAGTGAAGAGCTTCCTTTGCGAAATCGAGTTGATCAACAACTGGTTTACTCATTGAGACAACATTTGGATGCATCAAATCAAGACAGTGATGGAGATATGCCTTTCTTCAGTTTTAGTTCTCTAAAGAATGCTACAGATGACTTCTCAGATGCTAATAAACTTGGAGAAGGCGGGTTTGGTCCAGTTTACAAGGGAAAGCTGATGGATGGTGAGGAAGTAGCTGTGAAAAGACTATCAACAAAATCAAATCAAGGATACGAAGAGTTCAAGAATGAAGCAAAGGTCATCTGGAAGCTTCAACATAAGAATCTGGTTAGACTACTGGGATATTGTGTGGAAGGAGAAGAAAAACTTCTAATCTATGAGTACATGGCAAATACAAGTCTTGATGCTTTCTTGTTTGATCCATTGAAGTGCAAACAACTCGACTGGCTCAAGCGCGAAAACATTCTCAATGGGATTGCAAGAGGAATTCTGTATCTCCATGAAGATTCTCGACTCAAAATCATCCATAGGGATTTGAAAGTGAGTAATGTACTGTTAGATGAGGAGATGAATCCAAAAATATCAGATTTTGGAACTGCTAGGATATTTGGAGGCAAGCAAATGGATGCCAGCACCAATAGAATAGTTGGAACATATGGGTATATGGCGCCAGAGTATGCTATGGAGGGAGTTTTCTCAGTTAAATCCGATGTATACAGTTTTGGAGTTCTAATCCTGGAGGTGATCAGTGGGAGAAAGAGCATTGGTTTTCTAAACATGGACAGAGCGCAGAACCTTCTGTCATATGCATGGGAGCTATGGAATGAAGGTAGAGCAGAAGAAATGATAGATGAGAACCTGGCTGGAGATTATCGTGAGAGTGAGGCCGTAAAATGGATCCAGATTGGCTTGCTGTGCGTGCAAGAAGATGCTAACACCAGACCCACCATGTCAATGGTTGTTCTAATGCTTGGAAGCCAGTCGGTTCACCTTCCTCAGCCCTCAAAACCTCCATTTCTTACAGGTCGAGGGTCTCTCAGTAGATATCAATATTCATCAACTGAAACAGGGACAGGGCTACTCACCACAGATCAGTCGTCTACTACTGCTTCTATCTAG 1902 41.96 MIHFFPQTPSLPSILLLISISGLIVPCCSQRYLNCSGTNTARPNLNSGINFLLNSLTSRASSHTFYTETYNGIHGLFLCRGDIPNEACHTCIEGASQQIKVTCSSQTNVPRIVLYNSLNQSTIEDRDFIDLALVSNLAQDAANANMMFKEGEVNVGGVDQRFGLAQCTRDIIKRDCEVCLTNLVTFAKGCCLRQRGWRVLAPNCNLRVEAFQFYGIPRPPSLNLDEEGGNRTRIIVISISTVAAAAVLLGMIYASFLWRNKRERDRSEELPLRNRVDQQLVYSLRQHLDASNQDSDGDMPFFSFSSLKNATDDFSDANKLGEGGFGPVYKGKLMDGEEVAVKRLSTKSNQGYEEFKNEAKVIWKLQHKNLVRLLGYCVEGEEKLLIYEYMANTSLDAFLFDPLKCKQLDWLKRENILNGIARGILYLHEDSRLKIIHRDLKVSNVLLDEEMNPKISDFGTARIFGGKQMDASTNRIVGTYGYMAPEYAMEGVFSVKSDVYSFGVLILEVISGRKSIGFLNMDRAQNLLSYAWELWNEGRAEEMIDENLAGDYRESEAVKWIQIGLLCVQEDANTRPTMSMVVLMLGSQSVHLPQPSKPPFLTGRGSLSRYQYSSTETGTGLLTTDQSSTTASI 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4974726 4977878 + CmaCh03G005160.1 Cma03g00516 290087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00516 633 ProSiteProfiles Protein kinase domain profile. 314 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00516 633 SMART serkin_6 314 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00516 633 SUPERFAMILY Protein kinase-like (PK-like) 298 585 IPR011009 -
Cma03g00516 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Cma03g00516 633 Gene3D Transferase(Phosphotransferase) domain 1 390 593 - -
Cma03g00516 633 Pfam Salt stress response/antifungal 37 107 IPR002902 -
Cma03g00516 633 Pfam Salt stress response/antifungal 133 209 IPR002902 -
Cma03g00516 633 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 135 610 - -
Cma03g00516 633 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 135 610 - -
Cma03g00516 633 CDD STKc_IRAK 320 585 - -
Cma03g00516 633 Pfam Protein tyrosine and serine/threonine kinase 318 583 IPR001245 GO:0004672|GO:0006468
Cma03g00516 633 Gene3D - 27 115 IPR038408 -
Cma03g00516 633 Gene3D - 116 213 IPR038408 -
Cma03g00516 633 Gene3D Phosphorylase Kinase; domain 1 275 389 - -
Cma03g00516 633 ProSiteProfiles Gnk2-homologous domain profile. 108 213 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00516 Cma-Chr3:4974726 Cma13g00711 Cma-Chr13:6409064 1.35E-143 dispersed
Cma03g00516 Cma-Chr3:4974726 Cma03g00517 Cma-Chr3:4979115 0 tandem
Cma18g00235 Cma-Chr18:1252604 Cma03g00516 Cma-Chr3:4974726 5.80E-27 transposed
Cma18g00234 Cma-Chr18:1249597 Cma03g00516 Cma-Chr3:4974726 4.12E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68410 PF07714 PK_Tyr_Ser-Thr 3.20E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00516 - - cmo:103484582 1015.76