Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00517 ATGTTCTGTTTCCTCAATTACAGATCTTCGCCAGTTTCGTTGCTACTTCTGATTTCAATCTTTGGGATTAGCCTCTCCCATCATTTCGAACCAAGATATAGGTTCCACATCTGTTCAACGCCAAGTAATATCACAACCAACTCTAATCTGGGTTCGGATCTCATTGGTATACTGGGTTCTTTATCCGAAGCTTCCTCCGACAGCTTCTACAATAGAACTTTCAATGGAATGTACGGCCTCGTACTCTGTCGTGGAGATATTCCCAACGATTACTGTCACAGTTGTGTCAGTACCGCAAGCATAGATGTGAGGGATCGATGCCCTCTAAGAGTAAACGCCACAATATGGTACGATGAATGCATGCTTAGATACTCAGACAAGAACTTCTTCGGAACCGTAGAGATCTCCCCGAGATTCCTCATGGGCGATTCAGGGAACCAGACATCGCCAGATGATAGTAATATTGATGGGTCTGCTCTGTTGTCTCAGATGGTCAGTGAAGCCTCGGTGTTACCGATGATGTACAAGGCAAACAAGTTGCATGGAACAGGCTATGGATTGGTTCAGTGCACAAGGGATCTCAACAGTAGCGCGTGTTATAAATGTTTGATGGCTCTGTTGGAGGAGATCGGGCAGGTTTACAAAGGGAGAGTGGGGTGGAGAATTTTGAGCCCAAGTTGTAGCATAACGTATGAGAAATATCTTTTCTATTCTCAATCAGCTTCGCCTCAAGATCCAGAGATGGACACAGGTGAACAAGTTCTGTTGCGAAATTTGGGAGATGTTAAGTCTGCAGAATTGATGAAGCAAGATTTGCATTCAAGAGATGGAGACAATGATGAAGAGATGCATTACTTCAGTTTCATCACCCTACAGGCTGCCACAAACAACTTTGCAGATGCAAATAGACTTGGAGAAGGCGGGTTTGGCCCGGTTTTCAAGGGAAAGCTGATGAATGGGGAAGAAATAGCTGTAAAAAGACTGTCAGTGAAGTCAAGCCAAGGTCATGATGAGTTCAAGAATGAAGTCATGGTCATAATGAAGCTTCAACACAAAAATCTGGTCAAGCTTTTGGGATGCTGTCTGGAGGGAGAGGAAATGCTCCTTGTATATGAGTACATGGCAAACACTAGTCTAGATGCCTTATTATTTGATCCAGTTAAATGCAAACAACTCGATTGGCTTAAGCGCAACAACATCATCAATGGAGTTGCAAAAGGAATTCTATATCTGCATGAAGACTCTCGGCTCAAAATCGTTCATCGGGATTTAAAAGCTAGCAATGTGTTGTTGGATGATGAGATGAATGCAAAGATATCAGACTTTGGAACGGCTAGAATATTCGGAGGCAAGCAAGTTGAGGCTAGCACCAACAGGGTTGTTGGCACTTTTGGATACATGGCACCAGAATATGCAATGGAGGGAGTGTTTTCTGTAAAATCGGATGTTTATAGCTTTGGAATCTTAATGCTAGAAGTGATAAGCGGGAGAAAGAACAGCGGTTTCTTCAAAGTAGACAATGCACAAAGCCTTCTATCACAAGCATGGCAACTATGGAAGGAAGGCAGAGAAGAGGAAATGGTTGATCCGAACCTGGTTGGAGATTGTTCTTTAAGCGAAGCTCTAAGATGGATCCAAATCGGGCTCCTGTGCGTACAAGAAGACCCTAACATCAGACCGACCATGTCAATGGTCGTTCTAATGCTTGGAAGCAAATCGATTCCTCTTCCTCAACCGTCGAAACCTCCATTCTTTCCGATTGGCTTTCCGGCGTCCGCCGGTCAATCTTCAACGACCTTAGAGGGAACGGGGTATCTCTCCACACAATCGTCTACCACAGCTTCTATCTAG 1851 44.14 MFCFLNYRSSPVSLLLLISIFGISLSHHFEPRYRFHICSTPSNITTNSNLGSDLIGILGSLSEASSDSFYNRTFNGMYGLVLCRGDIPNDYCHSCVSTASIDVRDRCPLRVNATIWYDECMLRYSDKNFFGTVEISPRFLMGDSGNQTSPDDSNIDGSALLSQMVSEASVLPMMYKANKLHGTGYGLVQCTRDLNSSACYKCLMALLEEIGQVYKGRVGWRILSPSCSITYEKYLFYSQSASPQDPEMDTGEQVLLRNLGDVKSAELMKQDLHSRDGDNDEEMHYFSFITLQAATNNFADANRLGEGGFGPVFKGKLMNGEEIAVKRLSVKSSQGHDEFKNEVMVIMKLQHKNLVKLLGCCLEGEEMLLVYEYMANTSLDALLFDPVKCKQLDWLKRNNIINGVAKGILYLHEDSRLKIVHRDLKASNVLLDDEMNAKISDFGTARIFGGKQVEASTNRVVGTFGYMAPEYAMEGVFSVKSDVYSFGILMLEVISGRKNSGFFKVDNAQSLLSQAWQLWKEGREEEMVDPNLVGDCSLSEALRWIQIGLLCVQEDPNIRPTMSMVVLMLGSKSIPLPQPSKPPFFPIGFPASAGQSSTTLEGTGYLSTQSSTTASI 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4979115 4986883 + CmaCh03G005170.1 Cma03g00517 290088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00517 616 SMART serkin_6 298 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00517 616 ProSiteProfiles Gnk2-homologous domain profile. 32 129 IPR002902 -
Cma03g00517 616 SUPERFAMILY Protein kinase-like (PK-like) 280 593 IPR011009 -
Cma03g00517 616 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 13 247 - -
Cma03g00517 616 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 276 598 - -
Cma03g00517 616 Gene3D - 31 129 IPR038408 -
Cma03g00517 616 Gene3D - 139 236 IPR038408 -
Cma03g00517 616 Pfam Protein tyrosine and serine/threonine kinase 302 567 IPR001245 GO:0004672|GO:0006468
Cma03g00517 616 Gene3D Transferase(Phosphotransferase) domain 1 374 574 - -
Cma03g00517 616 Gene3D Phosphorylase Kinase; domain 1 272 373 - -
Cma03g00517 616 CDD STKc_IRAK 304 569 - -
Cma03g00517 616 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 13 247 - -
Cma03g00517 616 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 276 598 - -
Cma03g00517 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Cma03g00517 616 ProSiteProfiles Gnk2-homologous domain profile. 135 236 IPR002902 -
Cma03g00517 616 Pfam Salt stress response/antifungal 38 126 IPR002902 -
Cma03g00517 616 Pfam Salt stress response/antifungal 178 234 IPR002902 -
Cma03g00517 616 ProSiteProfiles Protein kinase domain profile. 298 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00517 Cma-Chr3:4979115 Cma03g00519 Cma-Chr3:4991188 7.36E-18 dispersed
Cma14g00663 Cma-Chr14:3324305 Cma03g00517 Cma-Chr3:4979115 1.10E-104 dispersed
Cma03g00513 Cma-Chr3:4967127 Cma03g00517 Cma-Chr3:4979115 1.86E-42 proximal
Cma03g00516 Cma-Chr3:4974726 Cma03g00517 Cma-Chr3:4979115 0 tandem
Cma03g00517 Cma-Chr3:4979115 Cma03g00518 Cma-Chr3:4988841 1.18E-89 tandem
Cma18g00232 Cma-Chr18:1246635 Cma03g00517 Cma-Chr3:4979115 2.02E-25 transposed
Cma11g01842 Cma-Chr11:12290488 Cma03g00517 Cma-Chr3:4979115 1.66E-31 wgd
Cma19g00935 Cma-Chr19:8341707 Cma03g00517 Cma-Chr3:4979115 4.82E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68411 PF07714 PK_Tyr_Ser-Thr 3.30E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00517 - - csv:101207389 1022.69