Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00527 ATGTTCGATCCAGATATGTTCCATACACTACACCCTCACCCTCACCATCATATGTTTGACATGGCGTTTAACACCTCCGGGAACGAGTTGGAACATGTGAGAGACGATGATTTTGAGTCCAAATCAGGACCTGAAATCACCTTCGAGCCGCCTTGTGAGAGTGATCATCAACAACGCTCCAAGAAGAGACGTTACAATCGCCATACACACCACCAAATCCAAGAAATGGAAGCATTCTTTAAGGAATGTCCGCACCCAGATGACAAGCAGAGAATGGATCTTAGCCGCGAGCTGGGGTTAGAGCCATTGCAAGTCAAGTTTTGGTTTCAGAACAAACGCACCCAAATGAAGGCTCAACAGGAAAGACATGAAAACGCCATTTTGAAAGCTGAAAATGAAAAGCTTCGAGCTGAGAATACTCGCTATAGAGAAGCATTCGCCCACTCCACCTGCCCCAACTGTGGTTCCTCCGCCACTGCCCTCGGCGAGATGTCCTTCGACGACCAACATTTGCGCATTGAAAATTCTCGTTTGCGAGATGAGATTGAGCGAATGAGTGGATATGGCCTGAAATCCACGAAGTCTGTCCCTTCTTCGTACTATCACCTTCCGTCCAATGCTCCACAGTCGTCGGGTTTCGTTGGGGAAATGTATGGAGCATGCGACTTTCTCCGCTCCATTTCCAGACCTTCAGAAGCCGACAAGCCAATCATTGTAGAACTGGCGGTTTCCGGCATGGAGGAATTGAGCCGAATGGCTCAGGCCGGAGAACCGTTGTGGGTTCCGGCTGATACCAAGTCAAGTGAGGTGGTTCTTAACGAAACAGAGTATTTGAGCTGTTTTGGGGGCACAGTTGGGCCCAAACCCTTGGGCTTTAGAACCGAAGCTTCACGAGTTTCGGCTATTGTGTTCATGAACCATATTAAGCTTATGGATATTTTAATGGACGCTACGCAATGGTCCACTGTGTTCTGCGGCATTGTTTCCAGGGCGTCCACCGTCGATGTTCTTTCCCCTGGCCTACCCGGAAACTTCAACGGCGCCTTGCACCTGATGAGTGCTGAATTCCAAGTCCCATCGCCACTTGTTCCAACACGTGAAAACTACTTTGTAAGATACTGCAAACAGCAGGGGGATGGGGTATGGGTGGTGGCTGATGTTTCCTTGGACACCTTGCGGCCCTGTTCCATGCCAAGGACCCGAAGGAGACCCTCTGGTTGTTTGATTCAACAATTGCCCAACGGCTATTCAAAGATCACTTGGGTGGAACATTTTGAGGCCGACGAAACTGGTGTCCCTACAATGTACAGACCGCTCTTTAATTCAGGCCTCGCTTTTGGGGCTAAACGATGGGTTGCTACTTTAGATAGGCAATCTGAACGGTTTGCCACATCAATCGCCACCTCCATATCCACCGGCGATCTACGCGTTATATCGAGTATTGACGGGAGGAAGAGTATGCTGAAGCTAGCAGAGAGAATGGTGACGAGCTTTTGCGCCGGCGTTGGCGCGTCGAGTGTACACGCTTGGACGGCGTTACCAATCGCCGCTGGTGATGATGTTCGGGTTGTAACGAGGAAGAGCACGGACGAACCAGGGCGACCACCCGGTGTTGTGCTGAGCGCCGCCACTTCTTTTTGGATCCCTGTTCCACCTAAGGTTGTGTTTGATTTCCTTCGGAAAGAGAAATCTCGAAGCGAGTGGGATATTCTGTCGAATGGGGGCTTAGTCCAGGAAATGGCGCACATAGCCAACGGCCGCCACTCCGGGAATTGTGTTTCCTTGCTCCGTGTCAATAGTGCAAATTCGAGCCAGAGCAATATGCTGATACTACAAGAAAGCTGCACCGACTCTACAGGATCCTACGTCATTTATGCTCCAGTGGACACAGTTGCAATGAACGTGGTGCTAACCGGTTGCGATCCGGATTACGTGGCACTTCTACCGTCGGGATTCGCCATACTCCCTGACGGACCCGCCGGGGCCAACGGCGGGGAAATTCTGGAGCTGGGCTCCGGTGGGTCACTCATCACGGTCGCATTTCAAATCCTGGTTGATTCAGTTCCAACAGCTAGACTTTCAATTGGATCAGTAGCCACCGTGAATAGCTTGATTAAGTGCACGGTTGAGAGGATCAGAGCCGCTGTGATGCGGGAAAAGCCCTAA 2166 50.83 MFDPDMFHTLHPHPHHHMFDMAFNTSGNELEHVRDDDFESKSGPEITFEPPCESDHQQRSKKRRYNRHTHHQIQEMEAFFKECPHPDDKQRMDLSRELGLEPLQVKFWFQNKRTQMKAQQERHENAILKAENEKLRAENTRYREAFAHSTCPNCGSSATALGEMSFDDQHLRIENSRLRDEIERMSGYGLKSTKSVPSSYYHLPSNAPQSSGFVGEMYGACDFLRSISRPSEADKPIIVELAVSGMEELSRMAQAGEPLWVPADTKSSEVVLNETEYLSCFGGTVGPKPLGFRTEASRVSAIVFMNHIKLMDILMDATQWSTVFCGIVSRASTVDVLSPGLPGNFNGALHLMSAEFQVPSPLVPTRENYFVRYCKQQGDGVWVVADVSLDTLRPCSMPRTRRRPSGCLIQQLPNGYSKITWVEHFEADETGVPTMYRPLFNSGLAFGAKRWVATLDRQSERFATSIATSISTGDLRVISSIDGRKSMLKLAERMVTSFCAGVGASSVHAWTALPIAAGDDVRVVTRKSTDEPGRPPGVVLSAATSFWIPVPPKVVFDFLRKEKSRSEWDILSNGGLVQEMAHIANGRHSGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVIYAPVDTVAMNVVLTGCDPDYVALLPSGFAILPDGPAGANGGEILELGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLIKCTVERIRAAVMREKP 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5028468 5032051 + CmaCh03G005270.1 Cma03g00527 290098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00527 721 SUPERFAMILY Homeodomain-like 48 120 IPR009057 -
Cma03g00527 721 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 26 718 - -
Cma03g00527 721 ProSiteProfiles START domain profile. 231 464 IPR002913 GO:0008289
Cma03g00527 721 CDD homeodomain 62 120 IPR001356 GO:0003677
Cma03g00527 721 Pfam Homeodomain 62 117 IPR001356 GO:0003677
Cma03g00527 721 Pfam START domain 242 461 IPR002913 GO:0008289
Cma03g00527 721 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 26 718 IPR042160 -
Cma03g00527 721 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Cma03g00527 721 Gene3D - 51 135 - -
Cma03g00527 721 MobiDBLite consensus disorder prediction 36 68 - -
Cma03g00527 721 SMART HOX_1 61 123 IPR001356 GO:0003677
Cma03g00527 721 SUPERFAMILY Bet v1-like 233 462 - -
Cma03g00527 721 SUPERFAMILY Bet v1-like 484 713 - -
Cma03g00527 721 SMART START_1 240 461 IPR002913 GO:0008289
Cma03g00527 721 Coils Coil 111 145 - -
Cma03g00527 721 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Cma03g00527 721 CDD START_ArGLABRA2_like 235 460 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01721 Cma-Chr2:9690724 Cma03g00527 Cma-Chr3:5028468 1.36E-25 dispersed
Cma03g00527 Cma-Chr3:5028468 Cma08g00920 Cma-Chr8:5742070 0 dispersed
Cma01g01144 Cma-Chr1:8366072 Cma03g00527 Cma-Chr3:5028468 7.01E-111 wgd
Cma11g01832 Cma-Chr11:12238851 Cma03g00527 Cma-Chr3:5028468 0 wgd
Cma13g00725 Cma-Chr13:6447191 Cma03g00527 Cma-Chr3:5028468 0 wgd
Cma19g00929 Cma-Chr19:8312158 Cma03g00527 Cma-Chr3:5028468 0 wgd
Cma02g00163 Cma-Chr2:753284 Cma03g00527 Cma-Chr3:5028468 0 wgd
Cma20g00628 Cma-Chr20:2926078 Cma03g00527 Cma-Chr3:5028468 0 wgd
Cma03g00527 Cma-Chr3:5028468 Cma07g00302 Cma-Chr7:1335086 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34620 PF01852 START 1.10E-47 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00527 K09338 - csv:101209093 1219.14