Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00528 ATGATCTCTTCACTCAGGCTCACATCTTCCAATCTCACCTCCTCTGAATTTTTCAACAGAAAGTCTCCAGTTCCAAGGCCGAATCTTCCGTTGCAATTCTCGGATTGCAGTGCTCTTAAGCATGTCGATCGATCTCTTTCTACCAACAAACCACTTCACATCTCATCCGTTGAGAATCTTTCTTTCCCCACAAAATCATCTGAGCGTTCGACGGCGTGCAGGGCGTACGAGGCCGAATCACGACCTCTTCAGATTAACATTGAACTTCCTGATGAACAGACGGCTCAGAAACTCAAAATTGGGCTCTATTTCGCTACTTGGTGGGCTTTGAATGTGGTGTTCAATGTCTACAACAAGAAGGTTCTTAATGCCTTCCCTTATCCATGGCTCACTTCCACTCTCTCCCTTGCCGCTGGATCGCTCATGATGCTTATTTCTTGGGCCACTAGAATGGTCGACGCTCCCAAAACCGATTTCGATTTCTGGAAATCCCTACTGCCGGTTGCAGTGGCGCATTCGATTGGGCATGTTGCAGCAACTGTGAGCATGTCCAAAGTCGCAGTCTCATTCACTCACATAATCAAGAGTGGGGAGCCGGCTTTCAGTGTGTTGGTGTCCAGGTTTCTATTGGGCGAGATGTTTCCATTACCAGTTTACTTATCTCTTATCCCAATCATTGGAGGCTGCGCTCTTTCCGCCGTTACGGAGCTCAACTTCAACATGACCGGTTTCTCGGGAGCGATGATATCGAACTTGGCATTTGTGTTTAGAAACATATTCTCAAAGAAAGGGATGAAGGGAAAGTCAGTGAGTGGGATGAATTACTACGCTTGCCTCTCATTGCTGTCTCTGCTAATTCTTACTCCTTTCGCCATTGCGGTGGAGGGACCCAAGTTGTGGGCTGAAGGATTCCAAAGGGCTCTCTCCCAAATTGGTCCCAATTTCATTTGGTGGTTGGGAGCTCAAAGTATGTTCTACCACTTGTACAACCAAGTGTCGTACATGTCTCTAGATCAGATATCGCCACTGACATTCAGCGTGGGTAACACAATGAAAAGAATATTCGTAATAGTGTCATCGATTATCATCTTCCACACCCCTGTCCGACCCATCAACGCCATTGGAGCTGCCATCGCAATCCTCGGAACCTTCATCTACTCTCAGGCAAGGCTGTGA 1176 47.19 MISSLRLTSSNLTSSEFFNRKSPVPRPNLPLQFSDCSALKHVDRSLSTNKPLHISSVENLSFPTKSSERSTACRAYEAESRPLQINIELPDEQTAQKLKIGLYFATWWALNVVFNVYNKKVLNAFPYPWLTSTLSLAAGSLMMLISWATRMVDAPKTDFDFWKSLLPVAVAHSIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEMFPLPVYLSLIPIIGGCALSAVTELNFNMTGFSGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSLLSLLILTPFAIAVEGPKLWAEGFQRALSQIGPNFIWWLGAQSMFYHLYNQVSYMSLDQISPLTFSVGNTMKRIFVIVSSIIIFHTPVRPINAIGAAIAILGTFIYSQARL 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5032836 5035001 + CmaCh03G005280.1 Cma03g00528 290099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00528 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 140 233 - -
Cma03g00528 391 Pfam Triose-phosphate Transporter family 98 387 IPR004853 -
Cma03g00528 391 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 98 389 IPR004696 GO:0016021|GO:0022857|GO:0055085
Cma03g00528 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 285 387 - -
Cma03g00528 391 PANTHER SOLUTE CARRIER FAMILY 35 38 390 - -
Cma03g00528 391 PANTHER GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC 38 390 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00528 Cma-Chr3:5032836 Cma16g00853 Cma-Chr16:5052238 0 dispersed
Cma01g01142 Cma-Chr1:8353848 Cma03g00528 Cma-Chr3:5032836 0 wgd
Cma03g00528 Cma-Chr3:5032836 Cma07g00303 Cma-Chr7:1339664 0 wgd
Cma03g00528 Cma-Chr3:5032836 Cma09g00938 Cma-Chr9:4699608 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00528 K15283 - csv:101216621 660.603