Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00537 ATGTGGGTATACTCAAAATCGTCTTCATCCGATGCCTCCGCTCTATCCTTTCGGCATTTTAACCCACTTCAAGTTCCTTTGCAAGGCTCTGCCTCGCGATCCTCATCTGTCACTCCGATTCATTGTGGCCTCCGTGAGCTTCGAGAACGGATCGATTCAGTGAAGAACACCCAGAAAATTACTGAGGCTATGAAGCTCGTTGCTGCTGCCAAAGTGCGTAGAGCTCAAGAAGCTGTTGTTAATGGAAGACCATTCTCGGAATCTCTAGTTGAAGTTCTTTACAACATCAACGAGCAGCTCCAAACCGAAGATATAGATGTTCCTCTTACAAACGTCCGACCGGTTAAGAAGGTTGCTTTGATTGTTGTAACAGGGGATCGTGGCCTCTGCGGAAGTTTCAATAACATGATCATCAAAAAGGCAGAATCCAGAATCGCAGAATTGAAGACCCTTGGCGTTGATTATACAGTTATTAGCGTTGGCAAGAAGGGCAATTCGTATTTCCTTCGCCGGCCTTACATCCCAGTAGATAGATTTCTTGAGGGCGGTTCACTTCCCACAGCTAAAGAAGCTCAAGCCATTGCAGACGATGTTTTTTCCCTCTTTGTTAGCGAAGAGGTCGACAAAGTCGAGCTTCTGTACACCAAATTCGTGTCATTAGTCAAATCGGACCCTGTGATCCACACACTGCTTCCATTGTCCCCGAAAGGAGAGATTTGTGATATAAATCGTGTTTGTGTCGATGCCGCAGAGGACGAGTTCTTCAGATTGACGACAAAAGAAGGAAAATTAACCGTAGAGAGAGATGCCGTGAGGACAAAAACCTCAGATTTTCCCCCAATTTTGCAGTTTGAGCAGGACCCAGTTCAGATTCTTGATGCTTTATTACCTCTCTATTTGAACAGTCAAATTTTGAGGTCATTGCAAGAATCATTAGCTAGTGAACTTGCTGCCAGAATGAGTGCCATGAGCAGTGCAACTGATAATGCAAGCGAGTTGAAGAAGACGCTCTCTATTGTCTACAACAGACAGCGTCAAGCCAAAATCACTGGCGAGATTTTGGAGATTGTTGCTGGTGCCAACGCTTTGACTTGA 1095 45.11 MWVYSKSSSSDASALSFRHFNPLQVPLQGSASRSSSVTPIHCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSESLVEVLYNINEQLQTEDIDVPLTNVRPVKKVALIVVTGDRGLCGSFNNMIIKKAESRIAELKTLGVDYTVISVGKKGNSYFLRRPYIPVDRFLEGGSLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINRVCVDAAEDEFFRLTTKEGKLTVERDAVRTKTSDFPPILQFEQDPVQILDALLPLYLNSQILRSLQESLASELAARMSAMSSATDNASELKKTLSIVYNRQRQAKITGEILEIVAGANALT 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5065340 5066434 + CmaCh03G005370.1 Cma03g00537 290108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00537 364 ProSitePatterns ATP synthase gamma subunit signature. 349 362 IPR023632 -
Cma03g00537 364 PANTHER ATP SYNTHASE GAMMA CHAIN 1 363 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma03g00537 364 Gene3D ATP synthase, gamma subunit, helix hairpin domain 263 363 - -
Cma03g00537 364 Coils Coil 44 64 - -
Cma03g00537 364 Pfam ATP synthase 44 363 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma03g00537 364 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 363 - -
Cma03g00537 364 Hamap ATP synthase gamma chain [atpG]. 41 363 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma03g00537 364 Gene3D - 110 234 - -
Cma03g00537 364 CDD F1-ATPase_gamma 44 360 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma03g00537 364 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 43 363 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma03g00537 364 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 43 363 IPR035968 GO:0015986|GO:0045261|GO:0046933
Cma03g00537 364 Gene3D ATP synthase, gamma subunit, helix hairpin domain 43 109 - -
Cma03g00537 364 PRINTS ATP synthase gamma subunit signature 341 362 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma03g00537 364 PRINTS ATP synthase gamma subunit signature 115 134 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma03g00537 364 PRINTS ATP synthase gamma subunit signature 310 329 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma03g00537 364 PRINTS ATP synthase gamma subunit signature 208 225 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00537 Cma-Chr3:5065340 Cma16g00864 Cma-Chr16:5162871 8.74E-139 dispersed
Cma13g00740 Cma-Chr13:6538101 Cma03g00537 Cma-Chr3:5065340 0 wgd
Cma18g00259 Cma-Chr18:1357052 Cma03g00537 Cma-Chr3:5065340 3.23E-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00537 K02115 - csv:101218747 651.744