Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00549 ATGGACAAAGGATGGGGTCTAACCATGCGTGATTCTGATCAGTCAATTGGGTTCCTCTCACACAACCCATCGCCGCTTACTCTCAATTCCTTTCATACAATGTTTCGTGCCACAGATTTTCCGGTAAAACTTTCCCGGAGTGACGACAACGATGCGCCTCCACCGCCGGCCGACGACAATCGCTTCGTCGTCAACGAGGTCGACTTTTTCTCCGATAACAAAAGGGTGGTTGATAATCACGAGGATCAAGACGCAAAACCTTCCGCTAATATTCTCGCCACCGCCCTTGTCAATAAAGACGACAAAGTTTCCTCTGCTACCGGAACTGCCTTCAATCGTGTCAATACTGGGTTGCATTTGTTAACTGCTAACACCGGAAGCGATCAATCGTCGACGGTGGATGATGGAATTTCATCGGATGGTGATGATAAACGAGCCAAAAACGAGTTAGCGCAGCTTCAAATGGAGCTCCAGCGTATGAAAGCGGAGAATCACAAGCTTAGGGACATGCTAACCCATGTGAGCAACAACTACAGTACCCTACAAATGCATTTCTTTACCTTATTGCAACAGAATCAGGCCTCCCAACCCGGTCATGAACCAGAGATTGGGGAGAAGAAATCGAGGGAATTAAAACAAGAAGGGGGAAGGGCGGTGGTTCCGAGGCAATTTATGAATCTAGGACCAAGTGGGAACACAGCTGAAATGGATGAATTATCTAATTCATCATCGGATGAAAGAACTCGTTCCGGGTCTCCGTTGAACAACAACAACAACAACAACAACAACAATTCGGAATCCGCCTCCAAAAAGAGCAGTGCAAGAGATCATCTCGAAATCGCCGCCCCTTCCGACCAGGGGAATTCCAATTTCAGAGATGCCAAACGATCCATCCCCAGAGAAGAAAGCTCGGAATCAGAGTCTCACGGATGGGGGCCTAATAAAGCCCCTCGATTCAACTCTTCTACTAAACCCCTCGAGCAATCCACCGAAGCCACCATGAGAAAAGCCCGCGTCTCAGTCCGTGCTCGATCAGAAGCTCCTATGATTTCTGATGGGTGTCAATGGCGAAAATATGGGCAAAAAATGGCCAAAGGAAACCCATGTCCACGGGCTTATTATCGGTGCACAATGGCTGTGGGTTGCCCTGTTCGCAAACAGGTGCAACGTTGTGCGGAAGACAGGACTATATTGATAACAACTTACGAAGGCAACCACAACCATCCACTTCCTCCCGCGGCGATGGCGATGGCGTCAACCACGACGGCGGCGGCTACCATGTTGTTATCAGGGTCCATGTCAAGTGCGGACCATAATCTAATGAACCCCAATTTATTGGCTCGAGCCATACTTCCATGTTCCTCAAGCATGGCTACAATTTCAGCCTCGGCTCCATTTCCAACCATCACGTTAGACCTCACTCAGACCCCAAACCCATTGCAGTTCCAAAGACCCGCGGCAGCACCCTTCCACCTGCCATTCCCCGGCGGACAACCACCGTTAGCCGCCGCCCAAGTTTTGGGGCAACCGTTGTACAATCAGTCAAAATTCTCAGGGCTACAGCTATCTCATGAGATGGGGGCCAATTCCCCTCATTTGGGTCACCCCCAAATTGCACAACCGGCGCCCACAACCCAGTCTGGTGGTGCTTCTTTTGCCGACACGTTGAGTGCCGCCACCGCCGCTATCACCGCCGATCCGAACTTCACCGCCGCTCTCGCAGCCGCTATCTCCTCCATCATCGGCGGAGCACATTCGAATACTAATAGCACCACCACCACCACCACCAATACCACAACAAACAACAACAACAACGGAAACAACAACAGCAAAATTAGCAGTTTCCCTGGAAATTAA 1857 50.24 MDKGWGLTMRDSDQSIGFLSHNPSPLTLNSFHTMFRATDFPVKLSRSDDNDAPPPPADDNRFVVNEVDFFSDNKRVVDNHEDQDAKPSANILATALVNKDDKVSSATGTAFNRVNTGLHLLTANTGSDQSSTVDDGISSDGDDKRAKNELAQLQMELQRMKAENHKLRDMLTHVSNNYSTLQMHFFTLLQQNQASQPGHEPEIGEKKSRELKQEGGRAVVPRQFMNLGPSGNTAEMDELSNSSSDERTRSGSPLNNNNNNNNNNSESASKKSSARDHLEIAAPSDQGNSNFRDAKRSIPREESSESESHGWGPNKAPRFNSSTKPLEQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAATMLLSGSMSSADHNLMNPNLLARAILPCSSSMATISASAPFPTITLDLTQTPNPLQFQRPAAAPFHLPFPGGQPPLAAAQVLGQPLYNQSKFSGLQLSHEMGANSPHLGHPQIAQPAPTTQSGGASFADTLSAATAAITADPNFTAALAAAISSIIGGAHSNTNSTTTTTTNTTTNNNNNGNNNSKISSFPGN 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5107884 5110515 - CmaCh03G005490.1 Cma03g00549 290120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00549 618 MobiDBLite consensus disorder prediction 294 308 - -
Cma03g00549 618 MobiDBLite consensus disorder prediction 524 551 - -
Cma03g00549 618 Pfam WRKY DNA -binding domain 352 409 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma03g00549 618 SMART WRKY_cls 350 410 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma03g00549 618 MobiDBLite consensus disorder prediction 583 618 - -
Cma03g00549 618 MobiDBLite consensus disorder prediction 226 269 - -
Cma03g00549 618 CDD bZIP 144 172 - -
Cma03g00549 618 ProSiteProfiles WRKY domain profile. 345 411 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma03g00549 618 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 60 602 IPR044810 GO:0003700
Cma03g00549 618 PANTHER WRKY TRANSCRIPTION FACTOR 31-RELATED 60 602 - -
Cma03g00549 618 SUPERFAMILY WRKY DNA-binding domain 343 411 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma03g00549 618 MobiDBLite consensus disorder prediction 193 333 - -
Cma03g00549 618 Gene3D WRKY domain 335 412 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma03g00549 618 Coils Coil 143 177 - -
Cma03g00549 618 MobiDBLite consensus disorder prediction 200 216 - -
Cma03g00549 618 MobiDBLite consensus disorder prediction 315 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00549 Cma-Chr3:5107884 Cma04g00508 Cma-Chr4:2585081 1.32E-49 dispersed
Cma11g01814 Cma-Chr11:12117559 Cma03g00549 Cma-Chr3:5107884 8.87E-140 wgd
Cma19g00912 Cma-Chr19:8235872 Cma03g00549 Cma-Chr3:5107884 1.65E-142 wgd
Cma03g00549 Cma-Chr3:5107884 Cma07g00324 Cma-Chr7:1412905 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34621 PF03106 WRKY 5.50E-24 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00549 - - mcha:111012275 810.831