Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00550 ATGGCTTCCCCATTATTATCCCTCTTCTTCCTCGCCACAATTATCCGCATCCATTCACCTTCCACCGCCTACTCCAACAGCTACACCAAACTAGCCCTCAATCCCATTGACGCATGCTGGAGGAGCAACCCCAACTGGGCGGCCAACCGCCGCGCCCTGGCAGCCTGCGCCGTAGGGTTTGGTAGTGACGCATTGGGAGGCAAATTTGGGTCAATCTACGTGGTCATAGACCCGTCGGACGACCCGGAATACCCGAAGCCCGGAACGCTGCGTTTTGGGGTGATCCAAGAGGAGCCATTATGGATTGTATTCGCAAGAGATATGGTGATTACTCCGGAAAGGGAACTGATGGTGAACAGCTTCAAGACCATCGACGGGCGAGGGGCTAAAGTGGAAATTGGCAATGGGCCATGCATTACCATCCAAAACGTGAGCCATGTCATAATCCACGGCATCACCATCCGTGACTGTAAGCCGGCCAAGCCTGGGCGCGTGAGGAGCTCGGTCACCCATTGTGGAGACCGCCAACAGTCCGATGGTGACGCCATTTCTGTATTCAGTTCTTCCCATATTTGGATCGACCATTGCTCCTTGGCTAGCTGCACTGACGGCCTCATTGACGTCATCCACGCTTCCACTGCCGTCACCATCTCCAATAATTACTTCTCTCAACATGATAAAGTGATCCTTCTCGGACACAACGATGAATTTACAGCTGATAGAATTATGAGAGTGACCGTAGCCTTCAATCGTTTTGGTGATGGGCTTGTTCAAAGAATGCCAAGGGTGAGATTTGGGTATGCCCATGTTGCCAATAATTGGTACCATAAGTGGCAAATGTACGCTGTGGGTGGCAGTGCAGATCCAAAAATCTTCAGCCAAGGAAACTATTTTGATGCTCCTGATGATTCATCCTCAAAGCAGGTTACAAAGAGAGAGGTTTATGTGAATGGATGGAAGAAGTGGAAATGGAGGTCTTCAAATGATGTGTTTGTGAATGGGGCTTATTTCATCCCATCTGGGTGGGGGTCTTGTACGCCTTTCTACACTCGAGCTCAAGCTTTTCCTGTGGCTCATGGCTCTTTGGCTCCTCTTTTGACTGATAGCGCTGGCGCTTTGAGTTGTGTTGTTGGTAAAGCTTGTTGA 1146 50.17 MASPLLSLFFLATIIRIHSPSTAYSNSYTKLALNPIDACWRSNPNWAANRRALAACAVGFGSDALGGKFGSIYVVIDPSDDPEYPKPGTLRFGVIQEEPLWIVFARDMVITPERELMVNSFKTIDGRGAKVEIGNGPCITIQNVSHVIIHGITIRDCKPAKPGRVRSSVTHCGDRQQSDGDAISVFSSSHIWIDHCSLASCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDEFTADRIMRVTVAFNRFGDGLVQRMPRVRFGYAHVANNWYHKWQMYAVGGSADPKIFSQGNYFDAPDDSSSKQVTKREVYVNGWKKWKWRSSNDVFVNGAYFIPSGWGSCTPFYTRAQAFPVAHGSLAPLLTDSAGALSCVVGKAC 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5115749 5117406 - CmaCh03G005500.1 Cma03g00550 290121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00550 381 SMART amb_all 107 304 IPR002022 -
Cma03g00550 381 PANTHER PECTATE LYASE 16-RELATED 19 379 - -
Cma03g00550 381 Pfam Pectate lyase 116 298 IPR002022 -
Cma03g00550 381 PRINTS Pollen allergen Amb family signature 56 73 IPR018082 -
Cma03g00550 381 PRINTS Pollen allergen Amb family signature 79 104 IPR018082 -
Cma03g00550 381 PRINTS Pollen allergen Amb family signature 115 131 IPR018082 -
Cma03g00550 381 PRINTS Pollen allergen Amb family signature 179 200 IPR018082 -
Cma03g00550 381 PRINTS Pollen allergen Amb family signature 259 278 IPR018082 -
Cma03g00550 381 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Cma03g00550 381 PRINTS Pollen allergen Amb family signature 322 346 IPR018082 -
Cma03g00550 381 PRINTS Pollen allergen Amb family signature 352 375 IPR018082 -
Cma03g00550 381 SUPERFAMILY Pectin lyase-like 34 372 IPR011050 -
Cma03g00550 381 Gene3D - 33 374 IPR012334 -
Cma03g00550 381 PANTHER PECTATE LYASE 18-RELATED 19 379 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00450 Cma-Chr3:4652415 Cma03g00550 Cma-Chr3:5115749 1.20E-53 dispersed
Cma03g00550 Cma-Chr3:5115749 Cma13g00770 Cma-Chr13:6648875 7.14E-145 dispersed
Cma07g00958 Cma-Chr7:4625139 Cma03g00550 Cma-Chr3:5115749 6.52E-52 dispersed
Cma13g00757 Cma-Chr13:6599653 Cma03g00550 Cma-Chr3:5115749 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00550 K01728 - csv:101210816 665.611