Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00553 ATGTGGAGGGGCATCGGAATTCCCGATCAGAAGCTCGTCGGACGAGGACCCTGCTGCATATCTTCCATATTTTTGATGTTTCTGGTCCTCACTGCACTTGATCGGTTTGGTTCCGCCTGTCGGCTCTTCCATTTTCGGCTTTTTTCCAGAACCACCAGCTTTAGGAGTTTAAGAATTGAATTTCAGCGTCCATCGCTTGTTCATGATGAAACATTGCCACCATCCTCGGCTCAGCGTAGAGGGTGCCTTGAAAATATGAACTGCATTTTGTGGGATTTCTTAACAATTTGTGGTACCATCTTTTATCTCTCTTTCTTTGTTTGGAGGGTTTGGTCGAACAAGGGCCCTCTAATATGCCTGAAGCCATATGATGAGACGTGGGGGCTTTGCCTTTTCTGTGGTGCACACAGAGAAGCCCAACTCTTTCATTTGGGAAGAGTTGGAAATTTCAACGACCATAGAAACATTGTCGTTCGTGAGATGAAAATAATGGCAGTGCCTCATCAGTGCCACTGCAACAACAAAAGAGGACGACGAGAGTTTTCATCGGGAAGGAGAGAGACGCACGGATTTTGTTCGTTGTTGTTGTTATCAATGGATGGTCCAAGTGGGAGTTCTTCAGGTGGAGGTATGATGAATTTTGTTGATCAAAACAGTCATAATGGGTTTAGTTCCATGATGATGATGATGCCCTTGATGTCCTCCTCTCATCAACAACAACATCACCAGGGAGATGCATGTAGCTCGTTTCTTCCTCCTCCTCCGCCGCCGCCTAATTACACCAACAATAACACTTCTAATTCAATTTCTTACTTCTTGGGTGAAACCAACAGCAACATCAACATCAACGAGGGTAGTAATGGTAATTCCTGTTGTGAATTGAAGGCCAAAATCATGGGTCATCCCCACTACCATCGCCTCCTTGTTGCCTATGTCAATTGCCGGAAGGTGGGGGCGCCGCCGGAAGTGGTGGCGAGGCTTGAACAAGCGTGTGCTTCTGCAGCAACAATGAGTGGTACGTCTTGTATTGGACAAGATCCGGGGCTTGACCAGTTCATGGAGGCTTACTGTGAGATGCTCACCAAATATGAACAAGAACTTTCTAAACCCTTTAGGGATGCCATGCTTTTTCTTCAACGAATTGAGTGCCAATTCAAAGCTCTCTCTATCTCCTCCTCCTCCGATGCTGGTTGCGGTGAGGCATTTGATAGGAACGGATCATCTGAAGAGGAAGTTGATATGAATGGGCAGTCGATTGACCCCTGGGCGGAAGACCATGAACTGAAAGGTCAACTCCTCCGAAAATACAGCAGATACTTGGGCAGTCTGAAGCAAGAATTCATGAAGAAACGGAAGAAAGGGAAGCTACCAAAGGAGGCCAGGCAACAGCTCCTGGATTGGTGGAGCAGACATTACAAATGGCCTTATCCATCCGAATCACAGAAGGTAGCTTTAGCTGAATCAACTGGGTTAGACCAAAAGCAAATCAACAACTGGTTCATCAACCAGAGAAAAAGACACTGGAAGCCATCTGAAGACATGCAGTTTGTGGTGATGGATGCTGCTCATCATCATCCTCAGTATTACATGGACTCCGTCTTGGGGAATCCTTTTCCATTTGATATCTCTCCCACTCTTCTCTAA 1644 46.17 MWRGIGIPDQKLVGRGPCCISSIFLMFLVLTALDRFGSACRLFHFRLFSRTTSFRSLRIEFQRPSLVHDETLPPSSAQRRGCLENMNCILWDFLTICGTIFYLSFFVWRVWSNKGPLICLKPYDETWGLCLFCGAHREAQLFHLGRVGNFNDHRNIVVREMKIMAVPHQCHCNNKRGRREFSSGRRETHGFCSLLLLSMDGPSGSSSGGGMMNFVDQNSHNGFSSMMMMMPLMSSSHQQQHHQGDACSSFLPPPPPPPNYTNNNTSNSISYFLGETNSNININEGSNGNSCCELKAKIMGHPHYHRLLVAYVNCRKVGAPPEVVARLEQACASAATMSGTSCIGQDPGLDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIECQFKALSISSSSDAGCGEAFDRNGSSEEEVDMNGQSIDPWAEDHELKGQLLRKYSRYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHHHPQYYMDSVLGNPFPFDISPTLL 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5146944 5155083 - CmaCh03G005530.1 Cma03g00553 290124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00553 547 SUPERFAMILY Homeodomain-like 449 524 IPR009057 -
Cma03g00553 547 SMART HOX_1 449 514 IPR001356 GO:0003677
Cma03g00553 547 SMART KNOX2_2 339 390 IPR005541 GO:0003677|GO:0005634
Cma03g00553 547 Pfam KNOX1 domain 294 332 IPR005540 GO:0003677|GO:0005634
Cma03g00553 547 ProSitePatterns 'Homeobox' domain signature. 485 508 IPR017970 GO:0000981|GO:0006355
Cma03g00553 547 Pfam Homeobox KN domain 467 506 IPR008422 GO:0003677|GO:0006355
Cma03g00553 547 CDD homeodomain 459 511 IPR001356 GO:0003677
Cma03g00553 547 Pfam ELK domain 427 448 IPR005539 GO:0003677
Cma03g00553 547 Pfam KNOX2 domain 342 388 IPR005541 GO:0003677|GO:0005634
Cma03g00553 547 ProSiteProfiles 'Homeobox' domain profile. 447 510 IPR001356 GO:0003677
Cma03g00553 547 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 201 536 - -
Cma03g00553 547 SMART ELK_2 427 448 IPR005539 GO:0003677
Cma03g00553 547 MobiDBLite consensus disorder prediction 234 264 - -
Cma03g00553 547 ProSiteProfiles ELK domain profile. 427 447 IPR005539 GO:0003677
Cma03g00553 547 PANTHER - 201 536 - -
Cma03g00553 547 Gene3D - 452 514 - -
Cma03g00553 547 SMART KNOX1_2 292 336 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00553 Cma-Chr3:5146944 Cma09g00322 Cma-Chr9:1326533 5.25E-82 dispersed
Cma11g01805 Cma-Chr11:12078928 Cma03g00553 Cma-Chr3:5146944 6.01E-119 wgd
Cma03g00553 Cma-Chr3:5146944 Cma07g00329 Cma-Chr7:1431763 9.74E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34622 PF03791 KNOX2 3.50E-20 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00553 - - cmax:111497440 507.679