Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00564 ATGGCGACCTCATGTTTTGGTTCACTTTGGATTCGAAAATCAAAGAGCAAACCCTTATCAACACCTGCCTCATTGAAATCCCAGAAGAATTCCGAAATGGAAAATATGGAAAGAAGAAGATTTGATAGCTTGGAATCGTGGTCGATGATCTTAGAGTCCGACAATGTGGAAACTTGGGAGACATCGAAAGAGGATCAGGAGGAGTGGACCGCTGATCTATCTCAACTCTTCATCGGTAACAAATTCGCCTCCGGTGCTCACAGTCGAATATACCGTGGAATTTACAAGCAGAGAGCCGTCGCTGTTAAGATGGTTAGAATCCCAAACCAAAACGAGGAAACCAGAGCCAAACTCGAGCAACAGTTCAAGTCTGAAGTCGCCTTGCTTTCTCGTCTCTTTCATCCCAACATAGTTCAGTTCATTGCAGCCAGTAAAAAGCCGCCGGTATACTGCATAATTACAGAGTATATGTCACAAGGAACTCTGAGAATGTATCTAAACAAGAAAGAGCCATATTCACTCTCAACAGAAACAATTCTAAGGTTAGCTCTTGACATATCAAGAGGAATGGAATACCTTCATTCCCAAGGAGTAATCCACAGAGACTTAAAATCAAACAACTTGCTTTTAAACGATGAAATGAGAGTAAAAGTAGCCGATTTCGGAACCTCCTGCCTCGAAACACAGTGCCGTGAATCGAAAGGAAACATGGGAACTTACCGATGGATGGCGCCGGAGATGATCAAGGAGAAGCCTTATACTCGCAAAGTTGATGTTTACAGCTTTGGGATTGTGCTGTGGGAGCTCACCACGGCTCTGCTTCCGTTTCAAGGGATGACCCCTGTGCAGGCTGCCTTTGCCGTCGCCGAGAAGAATGAGAGGCCGCCGTTACCGGCGAGTTGTCAGCCGGCGCTAGCTCACCTGATAAAACGATGTTGGGCGGCGAATCCGTCGAAGCGGCCGGATTTCAGTGACATTGTGGTGGCTTTGGAGAAATACGACGAGTGTGTGAAAGAGGGTCTTCCGCTTGCACATCATAGAAGATTGGTAAACCGAAACGCCATTATTGAACGCTTCAAAGCTTGTACCTCAACCGCCTCTTCAATACCTGTACATGCCTGA 1122 46.26 MATSCFGSLWIRKSKSKPLSTPASLKSQKNSEMENMERRRFDSLESWSMILESDNVETWETSKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQNEETRAKLEQQFKSEVALLSRLFHPNIVQFIAASKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCRESKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWAANPSKRPDFSDIVVALEKYDECVKEGLPLAHHRRLVNRNAIIERFKACTSTASSIPVHA 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5194841 5196618 + CmaCh03G005640.1 Cma03g00564 290135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00564 373 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 361 - -
Cma03g00564 373 Pfam Protein tyrosine and serine/threonine kinase 78 329 IPR001245 GO:0004672|GO:0006468
Cma03g00564 373 CDD STKc_MAP3K-like 83 327 - -
Cma03g00564 373 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 361 - -
Cma03g00564 373 Gene3D Phosphorylase Kinase; domain 1 65 158 - -
Cma03g00564 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Cma03g00564 373 PRINTS Tyrosine kinase catalytic domain signature 154 167 IPR001245 GO:0004672|GO:0006468
Cma03g00564 373 PRINTS Tyrosine kinase catalytic domain signature 192 210 IPR001245 GO:0004672|GO:0006468
Cma03g00564 373 PRINTS Tyrosine kinase catalytic domain signature 238 248 IPR001245 GO:0004672|GO:0006468
Cma03g00564 373 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Cma03g00564 373 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672|GO:0006468
Cma03g00564 373 SUPERFAMILY Protein kinase-like (PK-like) 50 327 IPR011009 -
Cma03g00564 373 SMART serkin_6 76 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00564 373 ProSiteProfiles Protein kinase domain profile. 76 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00564 373 Gene3D Transferase(Phosphotransferase) domain 1 159 354 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00564 Cma-Chr3:5194841 Cma18g00163 Cma-Chr18:825651 1.16E-141 dispersed
Cma03g00564 Cma-Chr3:5194841 Cma07g00340 Cma-Chr7:1466430 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68416 PF07714 PK_Tyr_Ser-Thr 1.10E-66 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00564 - - cmo:103484647 727.243