Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00582 ATGCGAGCGTCTCAGAATAGCCAGGCATCGTCTGGGATCCATGAGATGCATCACCAGTCTGTGCAAAAGATAGATCCCTACTATTTATCACATTTACACGTATTGAAAAACAATGTTTCTCCTGACGCAAGCAGCCAGGGAAACAGTGTTAACTTTTCTTCCTTTAAGGATCAGTTCTTTACTCTGGAATCATTTCCGGCTACTGCTGATCTGAGTGCCTGTAATTCCCCTTCTGCTGTAAGTGGTCTGTCTTCCAGGAGCCCCTTCTCACCTCAAGGTTCTCAATCATGCTCCTCAGATCAACCCCATTCCTTTGACAACACATGCGGATCACCACAAAGTGGATGCTCAGTGACTGATGATGATAACGAATTAAAGTACAAGCTGAAAGAATTAGAAATTTCTTTGCTGGGGCCTGAATCTGATATTGTGGATAGCTGCTACTGTTCTTTCAGGGGTGGGGCACATCAAGATGCTTCAGTAGCAAGGTGGAACTGGAATCAAGTGGCTGAGATGATTCCTAGACTAAACCTTCGGGATACGCTCATCCATTGTGCCCAAGCAATTCATGATTCTGATCTAAATGTGGCAACCTTATTTTTGGATGTTTTAGGGAAGATGGTTTCTGTCTCTGGTGATCCAGCCCAGAGGTTGGGCGCTTACTTGTTGGAAGGGCTTAGAGCGAAGTTGGAACGATCAGGGAGTGCAATATACAAGGCCCTAAAATGCGAAGAACCAACAAGCTCTGAACTCATGTCCTACATGTCTGTTCTATTCCAAATCTGCCCGTACTTTAAATTTGCTTACACCTCTGCCAATGCTGTCATTTGGGAGGCCATGGTAAATGAACCGATAATCCACATAATTGATTTCCAAATCGCACAGGGTAGTCAGTATATACCTCTCATCCATGATCTTGCTAATCGGCCTGGTGGACCCCCAGTTCTTCTACGCATCACTGGTGTGGATGATTCCCAATCATCTCATGCACGAGGAGGGGGACTTCACCTTGTGGGACAGAAGCTAGCTCAGCTGGCTCAATCAAAAGGAATTCCCTTCCAATTTCATGCTGCTGCAATGTCCGGTTGTGAGGTCGAACGTAGTAATCTTAGAATACGACCTGGAGAAGCGTTGGCCGTAAATTTTCCTTACGTCTTGCACCACATGCCAGATGAGAGTGTGAGCACACAGAATCACCGAGATCGGCTTCTAAGGCTAGTCAAAAGCCTGTCACCGAAAGTAGTAACTATTGTTGAGCAGGAATCTAACACAAACACATCCCCCTTCCTTCTTCGTTTTCTAGAGACGCTGGATTATTATACTGCTATGTTTGAATCAATAGATGTAGCTCGTTCGAGAGACGACAAGCAGCGAATCAGAGCGGAGCAGCACTGCGTGGCCCGAGACATAGTGAACATGGTAGCTTGTGAGGGATTTGAAAGGATAGAACGTCATGAACTCCTTGGCAAGTGGAGGATGAGAATGAAGATGGCTGGTTTCACTTCATATCCACTGAGCTCCTCTGTAAGTGGAGCCGTCAGGAATTTGTTGAGGGATTTTAATGGGAACTATAGACTCCAAGAAGTGGATGGGGCTCTCTACCTTGGCTGGAAAAACAGAGCAATGGCAACCTCCTCTGCATGGAGATGA 1650 45.94 MRASQNSQASSGIHEMHHQSVQKIDPYYLSHLHVLKNNVSPDASSQGNSVNFSSFKDQFFTLESFPATADLSACNSPSAVSGLSSRSPFSPQGSQSCSSDQPHSFDNTCGSPQSGCSVTDDDNELKYKLKELEISLLGPESDIVDSCYCSFRGGAHQDASVARWNWNQVAEMIPRLNLRDTLIHCAQAIHDSDLNVATLFLDVLGKMVSVSGDPAQRLGAYLLEGLRAKLERSGSAIYKALKCEEPTSSELMSYMSVLFQICPYFKFAYTSANAVIWEAMVNEPIIHIIDFQIAQGSQYIPLIHDLANRPGGPPVLLRITGVDDSQSSHARGGGLHLVGQKLAQLAQSKGIPFQFHAAAMSGCEVERSNLRIRPGEALAVNFPYVLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTIVEQESNTNTSPFLLRFLETLDYYTAMFESIDVARSRDDKQRIRAEQHCVARDIVNMVACEGFERIERHELLGKWRMRMKMAGFTSYPLSSSVSGAVRNLLRDFNGNYRLQEVDGALYLGWKNRAMATSSAWR 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5255162 5256811 - CmaCh03G005820.1 Cma03g00582 290153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00582 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 548 IPR005202 -
Cma03g00582 549 PANTHER SCARECROW-LIKE PROTEIN 13 18 548 IPR030005 -
Cma03g00582 549 MobiDBLite consensus disorder prediction 84 117 - -
Cma03g00582 549 Pfam GRAS domain family 178 549 IPR005202 -
Cma03g00582 549 ProSiteProfiles GRAS family profile. 169 549 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00582 Cma-Chr3:5255162 Cma20g00670 Cma-Chr20:3070596 0 dispersed
Cma03g00582 Cma-Chr3:5255162 Cma07g00354 Cma-Chr7:1515619 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34624 PF03514 GRAS 1.50E-124 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00582 - - mcha:111005597 983.015