Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00597 ATGGCCTCAATTGCTGGTTCCAAGGCTTCCTCAAATCAGCCACAAAAAACAGCTAATGGTGAAATGGCTAATGGAAAGGATGCCGGGCTATTGCCTCCGAAGATTTCCAAGTTAAGTAAACCTGAATCAGTTCCTTCTGATCAGTCTAAGTCAGTAAAGAGTATCTCAAAGCAGGATATGGAAATATCTTCCGACAAAAAGTCATCAGTATCGAATCAAAATGGATCTGCTAAGTTGTTGACTGAAAAATTTAATTTCAGCATATCTTCACCTGGTCTGAAACATACTTCAACTGAAGTAGATTCCCCTCACAATGAAGCTAGATGCTCACCTGGAAGCTCACTAGACCAGGAGAAGAAAACATCGGAATATGGAAGTGTTAAGATCAGTTCTGTTTCCGGCAAAGTAAGCGATGGAACTAGCTGCCTTGCCAAGACCAGTGGAAGTGCAAAGGTTAGCGACCATGGTAACTTTGTTGAGAGTGGAAAGAGCAGTATATGCAGAGGGAGCACGAGCAGTGATATAAGCGATGAGAGCTCTTGCAGTAGTTTTAGTAGTAGTATCAGTAAACCTCACAAAGCAAATGATTTGAGATGGGAGGCCATTCAAGTTGTCCGTGCAAAAGATGGGGCAATGGGATTAGGTCATTTTAGACTTCTGAAGAAGTTGGGTTGTGGGGATATTGGGAGTGTCTATCTCTCTGAGTTAAGTGGAACCAAATGCCATTTTGCCATGAAGGTTATGGATAAAAATACTCTAGCGAGTCGCAAAAAATTGCTTCGTGCGCAGACAGAAAGAGAAATACTTCAATCTCTTGATCACCCCTTCCTTCCGACGTTATACACCCACTTTGAGACAGAAAAATTCTCATGCTTGGTGATGGAGTTCTGTCCTGGAGGAGACTTGCACACTCTAAGGCAGAGGCAACCAGGGAAGCATTTTCCCGAGCAGGCAGTGAAATTCTATGTAGCAGAGGTTCTTCTTGCACTGGAATACCTGCACATGCTTGGGATTGTGTACCGTGATCTAAAGCCAGAAAATGTTCTTGTGAGGGAAGATGGACACATAATGCTTTCAGATTTTGACCTATCTCTCCGTTGCACTGTTAGTCCGACTCTTGTCAAAAATCTCTCTGCAGAGTCTGAGGCTTTAAGAAAGAACACAGGTTACTGTGTGCAGCCTGCTTGCATTGAACCTTCCTGTATCCAACCATCTTGTGTAGTTCCTACAACCTGCTTCTCACCACGCCTCTTTTCTAGTAAGTCGAAGAAGGAACGGAAACCCAAAACTGAAATTGGAAATCAGGTCAGCCCATTGCCAGAGCTCATTGCAGAACCAACTGATGCCCGATCCATGTCTTTTGTTGGAACTCATGAGTACTTAGCACCCGAGATCATCAAGGGTGAAGGCCATGGAAGTGCTGTAGATTGGTGGACTTTTGGAATTTTTCTATACGAGCTACTATTTGGTAAAACTCCTTTTAAGGGGTCTGGAAATCGAGCTACCTTATTCAACATTGTCGGTCAGCCACTTCGGTTTCCAGATGCACCAGTTGTGAGTTTTGCTGCCAAGGATCTGATAAGGGGATTGCTAGTGAAGGAACCACAACACAGATTGGCTTATAAACGTGGGGCAACTGAGATCAAGCAGCATCCTTTCTTTGAAGGTGTAAATTGGGCATTAATACGTTGTGCTACTCCTCCTGAAATCCCTAGGCCGGTCGAGATTGAGAGAATACCTCATGCAGTGGCATCAACCAGTGAAAAGGCCGTTGCTATTGCAGCAGCAGCAGCTGCAGATAAAAAGGCTTCCGATAATTATCTTGAGTTTGATTTCTTTTAG 1842 43.87 MASIAGSKASSNQPQKTANGEMANGKDAGLLPPKISKLSKPESVPSDQSKSVKSISKQDMEISSDKKSSVSNQNGSAKLLTEKFNFSISSPGLKHTSTEVDSPHNEARCSPGSSLDQEKKTSEYGSVKISSVSGKVSDGTSCLAKTSGSAKVSDHGNFVESGKSSICRGSTSSDISDESSCSSFSSSISKPHKANDLRWEAIQVVRAKDGAMGLGHFRLLKKLGCGDIGSVYLSELSGTKCHFAMKVMDKNTLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKNLSAESEALRKNTGYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKERKPKTEIGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNIVGQPLRFPDAPVVSFAAKDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPRPVEIERIPHAVASTSEKAVAIAAAAAADKKASDNYLEFDFF 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5305588 5309380 - CmaCh03G005970.1 Cma03g00597 290168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00597 613 MobiDBLite consensus disorder prediction 41 58 - -
Cma03g00597 613 Pfam Protein kinase domain 451 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00597 613 Pfam Protein kinase domain 218 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00597 613 MobiDBLite consensus disorder prediction 1 20 - -
Cma03g00597 613 ProSiteProfiles Protein kinase domain profile. 217 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00597 613 CDD STKc_phototropin_like 216 577 - -
Cma03g00597 613 Gene3D Transferase(Phosphotransferase) domain 1 448 572 - -
Cma03g00597 613 SUPERFAMILY Protein kinase-like (PK-like) 192 580 IPR011009 -
Cma03g00597 613 Gene3D Transferase(Phosphotransferase) domain 1 301 369 - -
Cma03g00597 613 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 613 - -
Cma03g00597 613 MobiDBLite consensus disorder prediction 88 127 - -
Cma03g00597 613 PANTHER FLIPPASE KINASE 1-RELATED 5 613 - -
Cma03g00597 613 SMART serkin_6 217 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma03g00597 613 MobiDBLite consensus disorder prediction 1 74 - -
Cma03g00597 613 Gene3D Phosphorylase Kinase; domain 1 215 300 - -
Cma03g00597 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01337 Cma-Chr2:7835428 Cma03g00597 Cma-Chr3:5305588 2.03E-146 dispersed
Cma03g00597 Cma-Chr3:5305588 Cma13g00321 Cma-Chr13:3713637 0 dispersed
Cma05g01306 Cma-Chr5:9908568 Cma03g00597 Cma-Chr3:5305588 3.18E-142 dispersed
Cma12g01220 Cma-Chr12:9513718 Cma03g00597 Cma-Chr3:5305588 2.55E-152 dispersed
Cma20g00178 Cma-Chr20:864044 Cma03g00597 Cma-Chr3:5305588 1.11E-148 dispersed
Cma18g00622 Cma-Chr18:5507489 Cma03g00597 Cma-Chr3:5305588 0 wgd
Cma03g00597 Cma-Chr3:5305588 Cma07g00363 Cma-Chr7:1552404 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68417 PF00069 Pkinase 9.60E-38 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00597 K08286 - csv:101209748 1105.12