Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00611 ATGTTTCAGCAACAGAGTACTCATAAGTCGAGCTTTCTTCAAAACAACTCATTAGTTCGTGATCAGAACATACCTTTTGATGCCAGCTCGATGGAACCCACAAATGGATGCAATGATCCCAGCAACACCCCAAATTTGGCCTCAAAACAGAGATTGCGATGGACACATGATCTTCACGAACGATTCGTTAATGCAGTGGCACAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGCGTCCTTAGAGTGATGGGTGTTCAAGGTCTAACGATATACCACGTTAAAAGCCACCTGCAGAAATATCGACTTGCAAAATACCTTCCCGACTCATCGTCTGATGGGAAAAAGGCTGACCAGAAGGATTCTATTGATGTTCTACCGAACATTGGTGGCTCGTCGGGAATGCAAATTACGGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGACTGCATGAACAATTAGAGGTACAGAGACAGCTACAGTTACGGATTGAAGCCCAAGGCAAGTACTTAAAGAAGATAATTGAAGAGCAACAAAAACTTAGTGGGGTTCTTTCAGGAGCAGCTCCAGTTGCCTCTTCCTGCTCAGCTCCTGCTTCTGGTGAGAACTGCCCAGAAACCGACAAGAACGACCCACCAACACCTGCGCCCACATCCGAGTTTCCTCGCCAAGAGAAAGCATCAAAGGAACGTGCCCAAGCCAAGAGTGTCTCTATTGATGATTCTTTCTCATCTCGTCACGAACCATTGACGCCCGATTCTGGTTGTCATAGCTCCCCAAATGAGAGCCCAAGGCCAGTGAAGAAGCAAAGACAGTACCAGGATGGTGCATTTGCCAAATCAGAGATGATACTCGCACATCAGATACTGGAGTCAAGTTTAAACTCCACTCACAAGGGATCACGCTCTGTTTTTCCAGCCAGAGAAACGTTGGATCCTTCATCTGGACTATCTATAGGGGACGATGAGCAGTTTGACTAA 984 46.85 MFQQQSTHKSSFLQNNSLVRDQNIPFDASSMEPTNGCNDPSNTPNLASKQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADQKDSIDVLPNIGGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAAPVASSCSAPASGENCPETDKNDPPTPAPTSEFPRQEKASKERAQAKSVSIDDSFSSRHEPLTPDSGCHSSPNESPRPVKKQRQYQDGAFAKSEMILAHQILESSLNSTHKGSRSVFPARETLDPSSGLSIGDDEQFD 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5371149 5375292 + CmaCh03G006110.1 Cma03g00611 290182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00611 327 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Cma03g00611 327 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Cma03g00611 327 Coils Coil 138 158 - -
Cma03g00611 327 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 3 324 - -
Cma03g00611 327 SUPERFAMILY Homeodomain-like 48 103 IPR009057 -
Cma03g00611 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Cma03g00611 327 MobiDBLite consensus disorder prediction 294 327 - -
Cma03g00611 327 MobiDBLite consensus disorder prediction 26 46 - -
Cma03g00611 327 Pfam MYB-CC type transfactor, LHEQLE motif 135 181 IPR025756 -
Cma03g00611 327 Gene3D - 48 107 - -
Cma03g00611 327 MobiDBLite consensus disorder prediction 238 268 - -
Cma03g00611 327 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 324 IPR044848 GO:0003700
Cma03g00611 327 MobiDBLite consensus disorder prediction 108 128 - -
Cma03g00611 327 MobiDBLite consensus disorder prediction 191 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00611 - - - cmax:111478721 639.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00611 Cma-Chr3:5371149 Cma14g00462 Cma-Chr14:2240356 9.33E-64 dispersed
Cma03g00611 Cma-Chr3:5371149 Cma07g00373 Cma-Chr7:1589213 2.40E-175 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma06g01228 . 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cma14g01894 . 51 289 G2-like Transcription Factor Family AT3G24120 59.1 3.8e-63 239.2
Cma20g00290 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 3.5e-40 162.9
Cma19g01121 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.8e-40 161.8
Cma02g00669 . 23 168 G2-like Transcription Factor Family AT3G24120 61.7 7.8e-40 161.8
Cma10g01192 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.7e-39 160.6
Cma19g00201 . 12 160 G2-like Transcription Factor Family AT3G24120 51.9 4.7e-37 152.5
Cma07g00372 . 60 178 G2-like Transcription Factor Family AT3G24120 66.9 6.2e-37 152.1
Cma19g00216 . 150 347 G2-like Transcription Factor Family AT5G16560 51.5 1.2e-40 164.9
Cma09g00194 CCT 1 164 G2-like Transcription Factor Family AT5G42630 56.8 1.4e-38 157.1
Cma12g00506 CCT,CST 13 151 G2-like Transcription Factor Family AT5G42630 58.6 7.9e-37 151.4
Cma04g02062 . 20 258 G2-like Transcription Factor Family AT1G25550 51.6 2.6e-50 196.4
Cma15g00910 . 20 257 G2-like Transcription Factor Family AT1G25550 53.4 1.0e-49 194.5
Cma03g00158 . 64 367 G2-like Transcription Factor Family AT5G05090 54.6 1.5e-74 276.9
Cma07g01099 . 1 299 G2-like Transcription Factor Family AT5G05090 53.9 5.3e-72 268.5
Cma14g00494 . 1 253 G2-like Transcription Factor Family AT5G05090 60.1 3.3e-66 249.2
Cma06g00034 . 1 274 G2-like Transcription Factor Family AT5G05090 51.7 1.3e-65 247.3
Cma06g01228 . 12 316 G2-like Transcription Factor Family AT4G13640 56.3 1.2e-61 234.2
Cma14g01894 . 44 336 G2-like Transcription Factor Family AT4G13640 50.3 2.1e-53 206.8
Cma06g01228 . 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cma14g01894 . 51 289 G2-like Transcription Factor Family AT3G24120 59.1 3.8e-63 239.2
Cma20g00290 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 3.5e-40 162.9
Cma19g01121 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.8e-40 161.8
Cma02g00669 . 23 168 G2-like Transcription Factor Family AT3G24120 61.7 7.8e-40 161.8
Cma10g01192 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.7e-39 160.6
Cma19g00201 . 12 160 G2-like Transcription Factor Family AT3G24120 51.9 4.7e-37 152.5
Cma07g00372 . 60 178 G2-like Transcription Factor Family AT3G24120 66.9 6.2e-37 152.1
Cma06g01737 . 38 269 G2-like Transcription Factor Family AT1G69580 50.4 2.3e-40 163.7
Cma05g00862 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 9.1e-37 151.8
Cma19g01121 . 1 379 G2-like Transcription Factor Family AT1G79430 53.8 7.8e-87 318.2
Cma10g01192 . 1 340 G2-like Transcription Factor Family AT1G79430 54.6 4.4e-82 302.4
Cma20g00290 . 1 365 G2-like Transcription Factor Family AT1G79430 52.7 2.5e-77 286.6
Cma02g00669 . 1 359 G2-like Transcription Factor Family AT1G79430 52.4 3.3e-77 286.2
Cma14g01894 . 52 225 G2-like Transcription Factor Family AT1G79430 59.8 9.3e-40 161.8
Cma06g01228 . 26 204 G2-like Transcription Factor Family AT1G79430 55.7 2.1e-39 160.6
Cma06g01737 . 77 285 G2-like Transcription Factor Family AT3G04030 59.4 3.1e-47 186.4
Cma06g01737 . 77 269 G2-like Transcription Factor Family AT5G18240 50.5 1.6e-38 157.5
Cma07g00373 . 76 319 G2-like Transcription Factor Family AT2G01060 60.7 2.8e-56 216.1
Cma03g00611 . 84 327 G2-like Transcription Factor Family AT2G01060 59.3 1.9e-52 203.4
Cma07g01099 . 1 299 G2-like Transcription Factor Family AT3G10760 61.9 1.3e-88 323.9
Cma03g00158 . 64 367 G2-like Transcription Factor Family AT3G10760 60.8 3.0e-88 322.8
Cma06g00034 . 1 277 G2-like Transcription Factor Family AT3G10760 58.8 8.6e-80 294.7
Cma14g00494 . 1 258 G2-like Transcription Factor Family AT3G10760 56.6 2.3e-72 270.0
Cma06g00034 . 1 205 G2-like Transcription Factor Family AT2G40970 62.5 1.5e-60 230.3
Cma07g01099 . 1 204 G2-like Transcription Factor Family AT2G40970 62.0 7.4e-60 228.0
Cma03g00158 . 64 266 G2-like Transcription Factor Family AT2G40970 58.8 1.4e-58 223.8
Cma14g00494 . 1 192 G2-like Transcription Factor Family AT2G40970 59.0 3.1e-58 222.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008809 1 2 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34627 PF00249 Myb_DNA-binding 1.20E-07 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00611 Cma_Chr03 FPKM 6.774436 8.682448 2.413481 2.060622 9.060305 11.041029 9.037542 1.263181 0.596982 0.918832