Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00611 ATGTTTCAGCAACAGAGTACTCATAAGTCGAGCTTTCTTCAAAACAACTCATTAGTTCGTGATCAGAACATACCTTTTGATGCCAGCTCGATGGAACCCACAAATGGATGCAATGATCCCAGCAACACCCCAAATTTGGCCTCAAAACAGAGATTGCGATGGACACATGATCTTCACGAACGATTCGTTAATGCAGTGGCACAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGCGTCCTTAGAGTGATGGGTGTTCAAGGTCTAACGATATACCACGTTAAAAGCCACCTGCAGAAATATCGACTTGCAAAATACCTTCCCGACTCATCGTCTGATGGGAAAAAGGCTGACCAGAAGGATTCTATTGATGTTCTACCGAACATTGGTGGCTCGTCGGGAATGCAAATTACGGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGACTGCATGAACAATTAGAGGTACAGAGACAGCTACAGTTACGGATTGAAGCCCAAGGCAAGTACTTAAAGAAGATAATTGAAGAGCAACAAAAACTTAGTGGGGTTCTTTCAGGAGCAGCTCCAGTTGCCTCTTCCTGCTCAGCTCCTGCTTCTGGTGAGAACTGCCCAGAAACCGACAAGAACGACCCACCAACACCTGCGCCCACATCCGAGTTTCCTCGCCAAGAGAAAGCATCAAAGGAACGTGCCCAAGCCAAGAGTGTCTCTATTGATGATTCTTTCTCATCTCGTCACGAACCATTGACGCCCGATTCTGGTTGTCATAGCTCCCCAAATGAGAGCCCAAGGCCAGTGAAGAAGCAAAGACAGTACCAGGATGGTGCATTTGCCAAATCAGAGATGATACTCGCACATCAGATACTGGAGTCAAGTTTAAACTCCACTCACAAGGGATCACGCTCTGTTTTTCCAGCCAGAGAAACGTTGGATCCTTCATCTGGACTATCTATAGGGGACGATGAGCAGTTTGACTAA 984 46.85 MFQQQSTHKSSFLQNNSLVRDQNIPFDASSMEPTNGCNDPSNTPNLASKQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADQKDSIDVLPNIGGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAAPVASSCSAPASGENCPETDKNDPPTPAPTSEFPRQEKASKERAQAKSVSIDDSFSSRHEPLTPDSGCHSSPNESPRPVKKQRQYQDGAFAKSEMILAHQILESSLNSTHKGSRSVFPARETLDPSSGLSIGDDEQFD 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5371149 5375292 + CmaCh03G006110.1 Cma03g00611 290182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00611 327 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Cma03g00611 327 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Cma03g00611 327 Coils Coil 138 158 - -
Cma03g00611 327 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 3 324 - -
Cma03g00611 327 SUPERFAMILY Homeodomain-like 48 103 IPR009057 -
Cma03g00611 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Cma03g00611 327 MobiDBLite consensus disorder prediction 294 327 - -
Cma03g00611 327 MobiDBLite consensus disorder prediction 26 46 - -
Cma03g00611 327 Pfam MYB-CC type transfactor, LHEQLE motif 135 181 IPR025756 -
Cma03g00611 327 Gene3D - 48 107 - -
Cma03g00611 327 MobiDBLite consensus disorder prediction 238 268 - -
Cma03g00611 327 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 324 IPR044848 GO:0003700
Cma03g00611 327 MobiDBLite consensus disorder prediction 108 128 - -
Cma03g00611 327 MobiDBLite consensus disorder prediction 191 280 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00611 Cma-Chr3:5371149 Cma14g00462 Cma-Chr14:2240356 9.33E-64 dispersed
Cma03g00611 Cma-Chr3:5371149 Cma07g00373 Cma-Chr7:1589213 2.40E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34627 PF00249 Myb_DNA-binding 1.20E-07 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00611 - - cmax:111478721 639.417