Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00620 ATGAGGGTTATTTGCCTTCTAGTATTGATGCTTCTCTTCAATGGGAGTTCCTCAATTGGAGATAGCAAAAATGTATCCATGAGACCAGATGTTGTCGACATTGGGGCTTTATTCTCTTTCAGTTCTATGATCGGCAGAGTTGGAAAAATTGCCGTGGAAGCTGCGGTCGAGGATGTAAATTATGATCCATCCATCTTGGGGGGGACGAAGCTGAAGCTCAGTTTACATGATACCAATTACAGTGGATTCTTGGGCATCATTGAATCCTTGCGTTTCATGGAGACTAAGACTTTGGCCATAATTGGCCCACAAAACTCTGTGACTGCTCATGTTTTATCTCATATTGCGAACGAGCTCCAAGTCCCTTTATTGTCGTTTTCGGCTACAGATCCCACACTGTCATCACTTCAGTTTCCTTTCTTTATTAGAACTTCACAGAATGATCTGTATCAGATGGCTGCCGTAGCTGAAATAGTTGATTACTTTCAATGGAGACAAGTGATTGCCATCTTTGTTGATGATGACCATGGTAGAAATGGTATTGCGGCATTGGGGGATCAACTTAATGAGAAACGATGCAAGATCTCGTTAAAAGTACCGTTGAAGCCTGATGCAAGTCGAGACGAGGTCACTGATGCACTTGTTAAGGTGGCTTTATCAGAGTCTCGGATACTCGTTGTTCATACTTATGAGACCACAGGTATGGTGGTGCTCGATGTGGCTCGATCTCTTGGAATGACAGAACCTGGGTATGTATGGATAGCCACTAACTGGCTTTCTTTACTACTCGACACGAATTCTCCTCTACCTTATTCTTCTATGGAAAATATTCAAGGACTTGTTGCTTTGCGTCTTTATTCACCAGATTCTGCACTGAAGAGGAGTTTTGTTTCAAGGTGGACTAATTTGACTAATGGAAAGGCATCAAGTGGTCCGCTCGGGTTGAGTACGTATGGATTATATGCTTACGATACGGTTTGGATGCTGGCTCATGCAATAAACGCATTTCTTAATGAAGGTGGAGATCTTTCATTTTCAAAACTTTCCAAGTTAACTGGAACTGATGTTGGAACTTTGAATTTGAACTCTATGAGCATCTTCAATGGTGGGAAGACACTACTTCAAAGAATTTTAGACGTCAAGTTTACTGGAATAACAGGTCGAGTTGAGTTCACTCCAGATAGGGACATAATTCGTCCTGCATTTGAAGTGATCAATATAATCGGCACGGGAGAGAGGAGAATTGGTTATTGGTCTAACTATTCTGGTTTGTCAACTGTGCCTCCTGAAACCCTTTACTCGGAACCACCTAACCGAACCAGTTCTAATCAAAAGCTATATGATGTGGTATGGCCTGGACAAGCAACACAGAAGCCTCGTGGGTGGGCATTTCCAAACAGTGGAAGACGATTGAGAATCGGAGTCCCAAGACGAGTAGGTTATCAAGAATTTGTCTCACAAGTAGAAGGAACCGACATGTTCCGAGGCTACTGCGTCGATGTCTTTACCGCAGCAATCAATTTGTTGCCTTATGCAGTCCCCTATAAGTTAATTCCATTTGGAGATGGCGTTACTAATCCGAGTGGAACCGAACTTGTTCGTCTACTCTCAACCGGGGTCTTTGATGCAGCTATGGGTGACATTGCAATTATCACGAACCGAACCAGGATGGCTGACTTTACGCAGCCATACATCGAGTCTGGCTTAGTAGTCGTAGCCCCGGTCAAGAAGTTGAACTCTAATGCTTGGGCTTTTTTATGGCCATTCACCCCGAAGATGTGGTGCATTACTGCTGTGTCTTTTCTTGTAATAGGAGCAGTTGTTTGGATTTTAGAGCATCGGATAAATGACGATTTTCGGGGGCCTCCGAAGCGACAAATTATTACTATTCTATGGTTCAGCTTTTCAACTCTGTTCTTCTCTCATCGGGAAAACACCGTCAGTACCCTCGGTCGAATCGTGCTGCTCGTATGGTTATTTGTTGTTCTAATTATCAACTCGAGCTACACTGCAAGCTTGACCTCTATCCTTACAGTTCAAAAACTTTCTTCTCCTGTCAAAGGGATTGAAACTTTGATTTCAAACAATGACCCAATTGGCTACCAGCAGGGTTCATTTGCTCGAAACTACTTGATCGAGGAACTTGGCATTCATGAGTCGAGACTCGTTCCACTCATCTCAACAGACCACTATGTCAAAGCGTTGAATGACGGGCCAACGAATAACGGTGTTGCTGCTATTATTGATGAGCGAGCATATGTAGAGCTCTTCCTTTCAACCCGTTGCGAATACAGCATTGTTGGCCAAGAGTTCACCAAAAATGGGTGGGGATTTGCTTTCCAGCGCGACTCTCCTTTAGCAGTTGACATGTCCACGGCTATTCTTAGACTCTCCGAAAATGGTGATCTTCAAAGGATCCATGACAAATGGTTAACGAAAAGTGCCTGTACATCACAAGCCTCGAAATTCGAGGTGGATCGACTTCAGCTCGGTAGCTTTTGGGGACTTTTTCTAATATCTGGATTGGCCTGCTTGCTCGCTCTATTGATTTACCTCTTTCTAACGGTGCGCCAATATAGCAAGCATTACCCTGAAGAACTCGGGTCTTCTGAGCGATCTTCTCGATCGTCAAGCTTGCATAGATTTCTTTCTTTTGCAGATGAAAAGGAAGAAGTCGTCAAAAGTCGATCCAAGCGTCGACGGATGCAGGAGGCTTCAGTTCGAAGCATGAATGAAGAAAATTTGACAGGCAGTTCAAGAAAACATGGGCATGGTGATGGTTATGATATTAATGCATGA 2799 43.59 MRVICLLVLMLLFNGSSSIGDSKNVSMRPDVVDIGALFSFSSMIGRVGKIAVEAAVEDVNYDPSILGGTKLKLSLHDTNYSGFLGIIESLRFMETKTLAIIGPQNSVTAHVLSHIANELQVPLLSFSATDPTLSSLQFPFFIRTSQNDLYQMAAVAEIVDYFQWRQVIAIFVDDDHGRNGIAALGDQLNEKRCKISLKVPLKPDASRDEVTDALVKVALSESRILVVHTYETTGMVVLDVARSLGMTEPGYVWIATNWLSLLLDTNSPLPYSSMENIQGLVALRLYSPDSALKRSFVSRWTNLTNGKASSGPLGLSTYGLYAYDTVWMLAHAINAFLNEGGDLSFSKLSKLTGTDVGTLNLNSMSIFNGGKTLLQRILDVKFTGITGRVEFTPDRDIIRPAFEVINIIGTGERRIGYWSNYSGLSTVPPETLYSEPPNRTSSNQKLYDVVWPGQATQKPRGWAFPNSGRRLRIGVPRRVGYQEFVSQVEGTDMFRGYCVDVFTAAINLLPYAVPYKLIPFGDGVTNPSGTELVRLLSTGVFDAAMGDIAIITNRTRMADFTQPYIESGLVVVAPVKKLNSNAWAFLWPFTPKMWCITAVSFLVIGAVVWILEHRINDDFRGPPKRQIITILWFSFSTLFFSHRENTVSTLGRIVLLVWLFVVLIINSSYTASLTSILTVQKLSSPVKGIETLISNNDPIGYQQGSFARNYLIEELGIHESRLVPLISTDHYVKALNDGPTNNGVAAIIDERAYVELFLSTRCEYSIVGQEFTKNGWGFAFQRDSPLAVDMSTAILRLSENGDLQRIHDKWLTKSACTSQASKFEVDRLQLGSFWGLFLISGLACLLALLIYLFLTVRQYSKHYPEELGSSERSSRSSSLHRFLSFADEKEEVVKSRSKRRRMQEASVRSMNEENLTGSSRKHGHGDGYDINA 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5405784 5409828 - CmaCh03G006200.1 Cma03g00620 290191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00620 932 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 924 - -
Cma03g00620 932 SMART GluR_14 472 813 IPR001320 GO:0015276|GO:0016020
Cma03g00620 932 PANTHER GLUTAMATE RECEPTOR 3.6 13 924 - -
Cma03g00620 932 MobiDBLite consensus disorder prediction 915 932 - -
Cma03g00620 932 Gene3D - 582 708 - -
Cma03g00620 932 Pfam Receptor family ligand binding region 50 408 IPR001828 -
Cma03g00620 932 Gene3D - 741 780 - -
Cma03g00620 932 SUPERFAMILY Periplasmic binding protein-like I 28 462 IPR028082 -
Cma03g00620 932 MobiDBLite consensus disorder prediction 891 907 - -
Cma03g00620 932 PIRSF IGluLR_plant 1 928 IPR017103 -
Cma03g00620 932 SUPERFAMILY Periplasmic binding protein-like II 449 814 - -
Cma03g00620 932 MobiDBLite consensus disorder prediction 891 932 - -
Cma03g00620 932 Gene3D - 466 581 - -
Cma03g00620 932 Gene3D - 781 811 - -
Cma03g00620 932 Gene3D - 50 399 - -
Cma03g00620 932 Gene3D - 147 424 - -
Cma03g00620 932 CDD GluR_Plant 469 811 - -
Cma03g00620 932 CDD PBP1_GABAb_receptor_plant 33 428 IPR044440 -
Cma03g00620 932 Pfam Bacterial extracellular solute-binding proteins, family 3 528 812 IPR001638 -
Cma03g00620 932 Pfam Ligand-gated ion channel 813 843 IPR001320 GO:0015276|GO:0016020
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00620 Cma07g00382 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00620 Cma-Chr3:5405784 Cma09g00038 Cma-Chr9:166741 0 dispersed
Cma01g02028 Cma-Chr1:12944004 Cma03g00620 Cma-Chr3:5405784 0 wgd
Cma03g00620 Cma-Chr3:5405784 Cma07g00382 Cma-Chr7:1636511 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00620 K05387 - csv:101213408 1610.89