Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g00620 | ATGAGGGTTATTTGCCTTCTAGTATTGATGCTTCTCTTCAATGGGAGTTCCTCAATTGGAGATAGCAAAAATGTATCCATGAGACCAGATGTTGTCGACATTGGGGCTTTATTCTCTTTCAGTTCTATGATCGGCAGAGTTGGAAAAATTGCCGTGGAAGCTGCGGTCGAGGATGTAAATTATGATCCATCCATCTTGGGGGGGACGAAGCTGAAGCTCAGTTTACATGATACCAATTACAGTGGATTCTTGGGCATCATTGAATCCTTGCGTTTCATGGAGACTAAGACTTTGGCCATAATTGGCCCACAAAACTCTGTGACTGCTCATGTTTTATCTCATATTGCGAACGAGCTCCAAGTCCCTTTATTGTCGTTTTCGGCTACAGATCCCACACTGTCATCACTTCAGTTTCCTTTCTTTATTAGAACTTCACAGAATGATCTGTATCAGATGGCTGCCGTAGCTGAAATAGTTGATTACTTTCAATGGAGACAAGTGATTGCCATCTTTGTTGATGATGACCATGGTAGAAATGGTATTGCGGCATTGGGGGATCAACTTAATGAGAAACGATGCAAGATCTCGTTAAAAGTACCGTTGAAGCCTGATGCAAGTCGAGACGAGGTCACTGATGCACTTGTTAAGGTGGCTTTATCAGAGTCTCGGATACTCGTTGTTCATACTTATGAGACCACAGGTATGGTGGTGCTCGATGTGGCTCGATCTCTTGGAATGACAGAACCTGGGTATGTATGGATAGCCACTAACTGGCTTTCTTTACTACTCGACACGAATTCTCCTCTACCTTATTCTTCTATGGAAAATATTCAAGGACTTGTTGCTTTGCGTCTTTATTCACCAGATTCTGCACTGAAGAGGAGTTTTGTTTCAAGGTGGACTAATTTGACTAATGGAAAGGCATCAAGTGGTCCGCTCGGGTTGAGTACGTATGGATTATATGCTTACGATACGGTTTGGATGCTGGCTCATGCAATAAACGCATTTCTTAATGAAGGTGGAGATCTTTCATTTTCAAAACTTTCCAAGTTAACTGGAACTGATGTTGGAACTTTGAATTTGAACTCTATGAGCATCTTCAATGGTGGGAAGACACTACTTCAAAGAATTTTAGACGTCAAGTTTACTGGAATAACAGGTCGAGTTGAGTTCACTCCAGATAGGGACATAATTCGTCCTGCATTTGAAGTGATCAATATAATCGGCACGGGAGAGAGGAGAATTGGTTATTGGTCTAACTATTCTGGTTTGTCAACTGTGCCTCCTGAAACCCTTTACTCGGAACCACCTAACCGAACCAGTTCTAATCAAAAGCTATATGATGTGGTATGGCCTGGACAAGCAACACAGAAGCCTCGTGGGTGGGCATTTCCAAACAGTGGAAGACGATTGAGAATCGGAGTCCCAAGACGAGTAGGTTATCAAGAATTTGTCTCACAAGTAGAAGGAACCGACATGTTCCGAGGCTACTGCGTCGATGTCTTTACCGCAGCAATCAATTTGTTGCCTTATGCAGTCCCCTATAAGTTAATTCCATTTGGAGATGGCGTTACTAATCCGAGTGGAACCGAACTTGTTCGTCTACTCTCAACCGGGGTCTTTGATGCAGCTATGGGTGACATTGCAATTATCACGAACCGAACCAGGATGGCTGACTTTACGCAGCCATACATCGAGTCTGGCTTAGTAGTCGTAGCCCCGGTCAAGAAGTTGAACTCTAATGCTTGGGCTTTTTTATGGCCATTCACCCCGAAGATGTGGTGCATTACTGCTGTGTCTTTTCTTGTAATAGGAGCAGTTGTTTGGATTTTAGAGCATCGGATAAATGACGATTTTCGGGGGCCTCCGAAGCGACAAATTATTACTATTCTATGGTTCAGCTTTTCAACTCTGTTCTTCTCTCATCGGGAAAACACCGTCAGTACCCTCGGTCGAATCGTGCTGCTCGTATGGTTATTTGTTGTTCTAATTATCAACTCGAGCTACACTGCAAGCTTGACCTCTATCCTTACAGTTCAAAAACTTTCTTCTCCTGTCAAAGGGATTGAAACTTTGATTTCAAACAATGACCCAATTGGCTACCAGCAGGGTTCATTTGCTCGAAACTACTTGATCGAGGAACTTGGCATTCATGAGTCGAGACTCGTTCCACTCATCTCAACAGACCACTATGTCAAAGCGTTGAATGACGGGCCAACGAATAACGGTGTTGCTGCTATTATTGATGAGCGAGCATATGTAGAGCTCTTCCTTTCAACCCGTTGCGAATACAGCATTGTTGGCCAAGAGTTCACCAAAAATGGGTGGGGATTTGCTTTCCAGCGCGACTCTCCTTTAGCAGTTGACATGTCCACGGCTATTCTTAGACTCTCCGAAAATGGTGATCTTCAAAGGATCCATGACAAATGGTTAACGAAAAGTGCCTGTACATCACAAGCCTCGAAATTCGAGGTGGATCGACTTCAGCTCGGTAGCTTTTGGGGACTTTTTCTAATATCTGGATTGGCCTGCTTGCTCGCTCTATTGATTTACCTCTTTCTAACGGTGCGCCAATATAGCAAGCATTACCCTGAAGAACTCGGGTCTTCTGAGCGATCTTCTCGATCGTCAAGCTTGCATAGATTTCTTTCTTTTGCAGATGAAAAGGAAGAAGTCGTCAAAAGTCGATCCAAGCGTCGACGGATGCAGGAGGCTTCAGTTCGAAGCATGAATGAAGAAAATTTGACAGGCAGTTCAAGAAAACATGGGCATGGTGATGGTTATGATATTAATGCATGA | 2799 | 43.59 | MRVICLLVLMLLFNGSSSIGDSKNVSMRPDVVDIGALFSFSSMIGRVGKIAVEAAVEDVNYDPSILGGTKLKLSLHDTNYSGFLGIIESLRFMETKTLAIIGPQNSVTAHVLSHIANELQVPLLSFSATDPTLSSLQFPFFIRTSQNDLYQMAAVAEIVDYFQWRQVIAIFVDDDHGRNGIAALGDQLNEKRCKISLKVPLKPDASRDEVTDALVKVALSESRILVVHTYETTGMVVLDVARSLGMTEPGYVWIATNWLSLLLDTNSPLPYSSMENIQGLVALRLYSPDSALKRSFVSRWTNLTNGKASSGPLGLSTYGLYAYDTVWMLAHAINAFLNEGGDLSFSKLSKLTGTDVGTLNLNSMSIFNGGKTLLQRILDVKFTGITGRVEFTPDRDIIRPAFEVINIIGTGERRIGYWSNYSGLSTVPPETLYSEPPNRTSSNQKLYDVVWPGQATQKPRGWAFPNSGRRLRIGVPRRVGYQEFVSQVEGTDMFRGYCVDVFTAAINLLPYAVPYKLIPFGDGVTNPSGTELVRLLSTGVFDAAMGDIAIITNRTRMADFTQPYIESGLVVVAPVKKLNSNAWAFLWPFTPKMWCITAVSFLVIGAVVWILEHRINDDFRGPPKRQIITILWFSFSTLFFSHRENTVSTLGRIVLLVWLFVVLIINSSYTASLTSILTVQKLSSPVKGIETLISNNDPIGYQQGSFARNYLIEELGIHESRLVPLISTDHYVKALNDGPTNNGVAAIIDERAYVELFLSTRCEYSIVGQEFTKNGWGFAFQRDSPLAVDMSTAILRLSENGDLQRIHDKWLTKSACTSQASKFEVDRLQLGSFWGLFLISGLACLLALLIYLFLTVRQYSKHYPEELGSSERSSRSSSLHRFLSFADEKEEVVKSRSKRRRMQEASVRSMNEENLTGSSRKHGHGDGYDINA | 932 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 5405784 | 5409828 | - | CmaCh03G006200.1 | Cma03g00620 | 290191 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g00620 | 932 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 13 | 924 | - | - | |
Cma03g00620 | 932 | SMART | GluR_14 | 472 | 813 | IPR001320 | GO:0015276|GO:0016020 | |
Cma03g00620 | 932 | PANTHER | GLUTAMATE RECEPTOR 3.6 | 13 | 924 | - | - | |
Cma03g00620 | 932 | MobiDBLite | consensus disorder prediction | 915 | 932 | - | - | |
Cma03g00620 | 932 | Gene3D | - | 582 | 708 | - | - | |
Cma03g00620 | 932 | Pfam | Receptor family ligand binding region | 50 | 408 | IPR001828 | - | |
Cma03g00620 | 932 | Gene3D | - | 741 | 780 | - | - | |
Cma03g00620 | 932 | SUPERFAMILY | Periplasmic binding protein-like I | 28 | 462 | IPR028082 | - | |
Cma03g00620 | 932 | MobiDBLite | consensus disorder prediction | 891 | 907 | - | - | |
Cma03g00620 | 932 | PIRSF | IGluLR_plant | 1 | 928 | IPR017103 | - | |
Cma03g00620 | 932 | SUPERFAMILY | Periplasmic binding protein-like II | 449 | 814 | - | - | |
Cma03g00620 | 932 | MobiDBLite | consensus disorder prediction | 891 | 932 | - | - | |
Cma03g00620 | 932 | Gene3D | - | 466 | 581 | - | - | |
Cma03g00620 | 932 | Gene3D | - | 781 | 811 | - | - | |
Cma03g00620 | 932 | Gene3D | - | 50 | 399 | - | - | |
Cma03g00620 | 932 | Gene3D | - | 147 | 424 | - | - | |
Cma03g00620 | 932 | CDD | GluR_Plant | 469 | 811 | - | - | |
Cma03g00620 | 932 | CDD | PBP1_GABAb_receptor_plant | 33 | 428 | IPR044440 | - | |
Cma03g00620 | 932 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 528 | 812 | IPR001638 | - | |
Cma03g00620 | 932 | Pfam | Ligand-gated ion channel | 813 | 843 | IPR001320 | GO:0015276|GO:0016020 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g00620 | Cma07g00382 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00620 | Cma-Chr3:5405784 | Cma09g00038 | Cma-Chr9:166741 | 0 | dispersed | |
Cma01g02028 | Cma-Chr1:12944004 | Cma03g00620 | Cma-Chr3:5405784 | 0 | wgd | |
Cma03g00620 | Cma-Chr3:5405784 | Cma07g00382 | Cma-Chr7:1636511 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g00620 | K05387 | - | csv:101213408 | 1610.89 |