Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00627 ATGGCGTTTTCCGATGAGAATAATCCCAACTTGATCAAACCCACTGGGTTTCTTCCAGGAGGAGGGTTGGAGGAGAGAGGGAGAGCTAATAATCGGAGGGCTCTTATTGATATTAATAAAAATTCTGTGGTGAATCAAGCCTACCCTTGTGTTCTTAACAAGAGAGGCCTCTCGGGAAAGCAAGAAATCTGCGAGAAAAAGCAGGTTGATCCATTTCATAGACCGATTACGAGAAAGTTTGCTGCTCAAATCGCGAGTAGCCAACAGCTTCATCATAATCCCCAGGAAAATAATGCATTTGGGCATTCCATATTTGTAGACGAAGATTGCAAAACCATAGAAAACGACCATCCAGTTCCCATGTTCTTGGAGAAACCAGAGCCATCATTTTCTCAAGAACCAAGCCAAATGGAGGAGGTTGAAATGGAGGATATTGCAGAAGATGACGACGACGACCCAGTAATCGACATCGATAGTGTCGATTCCGAGAACCCGCTTGCAGTTGTCGAGTATGTCGATGATCTCTATGAACACTACAGAAAAATTGAGAATTCAAGCTGTGTTCCTCCAAATTACATGAACAAACAAATTGATATTAATGAGAAGATGAGAGCTATATTGATTGATTGGCTTATAGAGGTGCACGACAAGTTTGATCTCATGGGAGAAACATTGTTCCTTACTGTGAATCTCATAGACAGGTTTTTGTCACAAAAAACAGTAGTGAGAAAGAAGCTTCAGCTGGTTGGTTTGGTTTCTATGCTGTTAGCTTGCAAGTACGAGGAAGTTTCTGTCCCTGTTGTGGGTGATTTGATTCTTATTTCTGATAAAGCTTACTCTAGAACAGAAGTTCTTGAACTGGAGACAGTGATGCTCAACTGTTTGCAGTTTAACATGTCTGTTCCCACACCCTTTGTCTTCCTCCAAAGGTTCCTTAAGGCTGCTCAAGCTGACAAAAAGCTCGAGCTGATGGCGTTCTTCTTGATCGAACTCTCGCTGGTCGAGTATGAAATGCTGAGGTTCCCACCGTCGTTGCTAGCAGCGGCGGCGACATATACAGCTCAATGTACTATTGCCGGAGTGGAGTGTTGTTGGAGCCGGACATGTGAGTGGCATTCCAGCTACTCAGAAGAGCATCTCCTAGAATGCTCGAGACTAATGGTGGGGTTTCATCAAAAGGCGGCGACGGGGAAGCTCACCGGAGTTCATAGGAAGTACTGTACATCAAAATTTAACTACACGGCAAAACGTGAACCTGCACATTTTCTTTTGCAGACTCAGCAATAA 1287 43.75 MAFSDENNPNLIKPTGFLPGGGLEERGRANNRRALIDINKNSVVNQAYPCVLNKRGLSGKQEICEKKQVDPFHRPITRKFAAQIASSQQLHHNPQENNAFGHSIFVDEDCKTIENDHPVPMFLEKPEPSFSQEPSQMEEVEMEDIAEDDDDDPVIDIDSVDSENPLAVVEYVDDLYEHYRKIENSSCVPPNYMNKQIDINEKMRAILIDWLIEVHDKFDLMGETLFLTVNLIDRFLSQKTVVRKKLQLVGLVSMLLACKYEEVSVPVVGDLILISDKAYSRTEVLELETVMLNCLQFNMSVPTPFVFLQRFLKAAQADKKLELMAFFLIELSLVEYEMLRFPPSLLAAAATYTAQCTIAGVECCWSRTCEWHSSYSEEHLLECSRLMVGFHQKAATGKLTGVHRKYCTSKFNYTAKREPAHFLLQTQQ 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5435253 5438049 + CmaCh03G006270.1 Cma03g00627 290198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00627 428 MobiDBLite consensus disorder prediction 1 25 - -
Cma03g00627 428 CDD CYCLIN 203 292 IPR013763 -
Cma03g00627 428 Pfam Cyclin, N-terminal domain 174 300 IPR006671 -
Cma03g00627 428 SMART cyclin_7 306 389 IPR013763 -
Cma03g00627 428 SMART cyclin_7 209 293 IPR013763 -
Cma03g00627 428 Gene3D - 174 415 - -
Cma03g00627 428 Pfam Cyclin, C-terminal domain 302 415 IPR004367 -
Cma03g00627 428 Gene3D - 188 300 - -
Cma03g00627 428 SUPERFAMILY Cyclin-like 163 299 IPR036915 -
Cma03g00627 428 PANTHER CYCLINS 22 423 IPR039361 -
Cma03g00627 428 PIRSF Cyclin_A_B_D_E 21 428 IPR039361 -
Cma03g00627 428 PANTHER CYCLIN-B2-1 22 423 - -
Cma03g00627 428 SUPERFAMILY Cyclin-like 301 420 IPR036915 -
Cma03g00627 428 SMART Cyclin_C_2 302 420 IPR004367 -
Cma03g00627 428 CDD CYCLIN 300 388 IPR013763 -
Cma03g00627 428 ProSitePatterns Cyclins signature. 204 235 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00627 Cma-Chr3:5435253 Cma07g01100 Cma-Chr7:5953674 1.68E-78 dispersed
Cma09g00055 Cma-Chr9:252777 Cma03g00627 Cma-Chr3:5435253 9.35E-51 dispersed
Cma01g02011 Cma-Chr1:12878049 Cma03g00627 Cma-Chr3:5435253 4.58E-161 wgd
Cma03g00627 Cma-Chr3:5435253 Cma07g00387 Cma-Chr7:1663930 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00627 K21777 - csv:101216622 731.095