Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g00627 | ATGGCGTTTTCCGATGAGAATAATCCCAACTTGATCAAACCCACTGGGTTTCTTCCAGGAGGAGGGTTGGAGGAGAGAGGGAGAGCTAATAATCGGAGGGCTCTTATTGATATTAATAAAAATTCTGTGGTGAATCAAGCCTACCCTTGTGTTCTTAACAAGAGAGGCCTCTCGGGAAAGCAAGAAATCTGCGAGAAAAAGCAGGTTGATCCATTTCATAGACCGATTACGAGAAAGTTTGCTGCTCAAATCGCGAGTAGCCAACAGCTTCATCATAATCCCCAGGAAAATAATGCATTTGGGCATTCCATATTTGTAGACGAAGATTGCAAAACCATAGAAAACGACCATCCAGTTCCCATGTTCTTGGAGAAACCAGAGCCATCATTTTCTCAAGAACCAAGCCAAATGGAGGAGGTTGAAATGGAGGATATTGCAGAAGATGACGACGACGACCCAGTAATCGACATCGATAGTGTCGATTCCGAGAACCCGCTTGCAGTTGTCGAGTATGTCGATGATCTCTATGAACACTACAGAAAAATTGAGAATTCAAGCTGTGTTCCTCCAAATTACATGAACAAACAAATTGATATTAATGAGAAGATGAGAGCTATATTGATTGATTGGCTTATAGAGGTGCACGACAAGTTTGATCTCATGGGAGAAACATTGTTCCTTACTGTGAATCTCATAGACAGGTTTTTGTCACAAAAAACAGTAGTGAGAAAGAAGCTTCAGCTGGTTGGTTTGGTTTCTATGCTGTTAGCTTGCAAGTACGAGGAAGTTTCTGTCCCTGTTGTGGGTGATTTGATTCTTATTTCTGATAAAGCTTACTCTAGAACAGAAGTTCTTGAACTGGAGACAGTGATGCTCAACTGTTTGCAGTTTAACATGTCTGTTCCCACACCCTTTGTCTTCCTCCAAAGGTTCCTTAAGGCTGCTCAAGCTGACAAAAAGCTCGAGCTGATGGCGTTCTTCTTGATCGAACTCTCGCTGGTCGAGTATGAAATGCTGAGGTTCCCACCGTCGTTGCTAGCAGCGGCGGCGACATATACAGCTCAATGTACTATTGCCGGAGTGGAGTGTTGTTGGAGCCGGACATGTGAGTGGCATTCCAGCTACTCAGAAGAGCATCTCCTAGAATGCTCGAGACTAATGGTGGGGTTTCATCAAAAGGCGGCGACGGGGAAGCTCACCGGAGTTCATAGGAAGTACTGTACATCAAAATTTAACTACACGGCAAAACGTGAACCTGCACATTTTCTTTTGCAGACTCAGCAATAA | 1287 | 43.75 | MAFSDENNPNLIKPTGFLPGGGLEERGRANNRRALIDINKNSVVNQAYPCVLNKRGLSGKQEICEKKQVDPFHRPITRKFAAQIASSQQLHHNPQENNAFGHSIFVDEDCKTIENDHPVPMFLEKPEPSFSQEPSQMEEVEMEDIAEDDDDDPVIDIDSVDSENPLAVVEYVDDLYEHYRKIENSSCVPPNYMNKQIDINEKMRAILIDWLIEVHDKFDLMGETLFLTVNLIDRFLSQKTVVRKKLQLVGLVSMLLACKYEEVSVPVVGDLILISDKAYSRTEVLELETVMLNCLQFNMSVPTPFVFLQRFLKAAQADKKLELMAFFLIELSLVEYEMLRFPPSLLAAAATYTAQCTIAGVECCWSRTCEWHSSYSEEHLLECSRLMVGFHQKAATGKLTGVHRKYCTSKFNYTAKREPAHFLLQTQQ | 428 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 5435253 | 5438049 | + | CmaCh03G006270.1 | Cma03g00627 | 290198 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g00627 | 428 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cma03g00627 | 428 | CDD | CYCLIN | 203 | 292 | IPR013763 | - | |
Cma03g00627 | 428 | Pfam | Cyclin, N-terminal domain | 174 | 300 | IPR006671 | - | |
Cma03g00627 | 428 | SMART | cyclin_7 | 306 | 389 | IPR013763 | - | |
Cma03g00627 | 428 | SMART | cyclin_7 | 209 | 293 | IPR013763 | - | |
Cma03g00627 | 428 | Gene3D | - | 174 | 415 | - | - | |
Cma03g00627 | 428 | Pfam | Cyclin, C-terminal domain | 302 | 415 | IPR004367 | - | |
Cma03g00627 | 428 | Gene3D | - | 188 | 300 | - | - | |
Cma03g00627 | 428 | SUPERFAMILY | Cyclin-like | 163 | 299 | IPR036915 | - | |
Cma03g00627 | 428 | PANTHER | CYCLINS | 22 | 423 | IPR039361 | - | |
Cma03g00627 | 428 | PIRSF | Cyclin_A_B_D_E | 21 | 428 | IPR039361 | - | |
Cma03g00627 | 428 | PANTHER | CYCLIN-B2-1 | 22 | 423 | - | - | |
Cma03g00627 | 428 | SUPERFAMILY | Cyclin-like | 301 | 420 | IPR036915 | - | |
Cma03g00627 | 428 | SMART | Cyclin_C_2 | 302 | 420 | IPR004367 | - | |
Cma03g00627 | 428 | CDD | CYCLIN | 300 | 388 | IPR013763 | - | |
Cma03g00627 | 428 | ProSitePatterns | Cyclins signature. | 204 | 235 | IPR006671 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00627 | Cma-Chr3:5435253 | Cma07g01100 | Cma-Chr7:5953674 | 1.68E-78 | dispersed | |
Cma09g00055 | Cma-Chr9:252777 | Cma03g00627 | Cma-Chr3:5435253 | 9.35E-51 | dispersed | |
Cma01g02011 | Cma-Chr1:12878049 | Cma03g00627 | Cma-Chr3:5435253 | 4.58E-161 | wgd | |
Cma03g00627 | Cma-Chr3:5435253 | Cma07g00387 | Cma-Chr7:1663930 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g00627 | K21777 | - | csv:101216622 | 731.095 |