Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma03g00646 | ATGAGTTCCTGTATGCTTCAAGACCATGGCTTGCGCCCGGGGCTTGCTGCTGCAGACCAATCAATTCCCTACTGGAACAACAAGGCCGACAATGCATGGCAGCTCACGGCAGCCACCATGGTCGGCCTCCAAACTGTTCCGGGGCTGGTCATCCTCTACGGCAGCATGGTGAAGAAAAAATGGGCTGTCAACTCCGCCTTCATGGCACTCTATGGCTTCGCTTCTGTGCTCGTCTGTTGGGTATTGTGGGCACATCGTATGGCATTCGGTGACCGATTGTTCTGGCTCATTGGTGTGCCAGGTGTAGCGCTGTCTGAAGGGTACCTTCTTTCACATTCTACACAAGGCTGTTTCCCAATGGCTGACTACGTGTTTTTCCAGTTCGCTTTCGCCGCCATTACTGTCGTGTTGCTCGCCGGGTCCTTGCTGGGAAGGATGAATTTTGGTGCATGGATGCTTTTTGTTCCAATGTGGCTAACTGTTTGTTACACTGTTGGGGCATTCTGTATATGGGGGAATGGGTTTATTCAGAAGTACCTCATTGATTACGCCGGCGGCTATGTCATTCATCTTTCTTCTGGGGTGGCTGGTTTCACTGCCGCTTACTGGGTCGGGCCACGACACTCCCGCGACAGGCAGAGCTTCCCACCAAACAACATACTGCACATGGTATTCGGTGCAGGGTTTCTTTGGCTGGGTTGGACTGGATTCAATGGAGGAGCTCCATTTGCAGCGGGTCGGATTACATCGCTAGCCATTTTGAACACGCATATTTGCACTGCAACAAGTCTGTTGATCTGGGTTTCAATGGACATCATAGTATACAAGAAAAGCTCTGTGATTGGTGCAGTTCAAGGGATCATCACTGGCCTTGTCTGTATCACTCCTGGTGCAGTCGCAGCTGTGGTGATGGGCGTGCTTGCTGGTTTGGTTCCATGGTACACCATGATGGTGCTGCACAGGAAGCTGGCATTCCTTCAGTGTGTCGACGATACTCTGGGTGTCTTCCACACACATGCTGTGGCTGGCTCCATGGGAGGACTCCTCACAGGTTTCTTTGCTAAACCCAGCCTTCTGAGAATGATGTATCCAGATTCTCTATACGGTCCAGGCTTCCTGTATGCCATCTCCAATAGAAAGCTCAAAGATGGCCTCAAACAAATTGGCATCCAGTTCGCTGGAGCAGTGTTTATCACCCTCTGGAATGCCATCTTTACCAGCATTATCTGTTACCTGATTAGCCATATTGTTAACTTAAGAATGAAAGAAGAGGACCTGGAAATAGGCGACGACGCTGCTCATGGAGAAGAACCCTATGCATTGTGGGGCGACGGAGAGAAGATGCCATCTTCATTTCGTCTTCCACACACCCCTAGGTTCCCATCATTATGCAGGTGGGATTAG | 1404 | 50.5 | MSSCMLQDHGLRPGLAAADQSIPYWNNKADNAWQLTAATMVGLQTVPGLVILYGSMVKKKWAVNSAFMALYGFASVLVCWVLWAHRMAFGDRLFWLIGVPGVALSEGYLLSHSTQGCFPMADYVFFQFAFAAITVVLLAGSLLGRMNFGAWMLFVPMWLTVCYTVGAFCIWGNGFIQKYLIDYAGGYVIHLSSGVAGFTAAYWVGPRHSRDRQSFPPNNILHMVFGAGFLWLGWTGFNGGAPFAAGRITSLAILNTHICTATSLLIWVSMDIIVYKKSSVIGAVQGIITGLVCITPGAVAAVVMGVLAGLVPWYTMMVLHRKLAFLQCVDDTLGVFHTHAVAGSMGGLLTGFFAKPSLLRMMYPDSLYGPGFLYAISNRKLKDGLKQIGIQFAGAVFITLWNAIFTSIICYLISHIVNLRMKEEDLEIGDDAAHGEEPYALWGDGEKMPSSFRLPHTPRFPSLCRWD | 467 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 5495475 | 5497121 | + | CmaCh03G006460.1 | Cma03g00646 | 290217 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma03g00646 | 467 | SUPERFAMILY | Ammonium transporter | 25 | 421 | - | - | |
Cma03g00646 | 467 | Pfam | Ammonium Transporter Family | 32 | 439 | IPR024041 | GO:0008519|GO:0016020|GO:0072488 | |
Cma03g00646 | 467 | Gene3D | Ammonium transporter AmtB like domains | 12 | 442 | IPR029020 | - | |
Cma03g00646 | 467 | PANTHER | AMMONIUM TRANSPORTER | 12 | 465 | - | - | |
Cma03g00646 | 467 | PRINTS | Rhesus blood group protein signature | 252 | 274 | IPR002229 | GO:0005887 | |
Cma03g00646 | 467 | PRINTS | Rhesus blood group protein signature | 127 | 143 | IPR002229 | GO:0005887 | |
Cma03g00646 | 467 | PRINTS | Rhesus blood group protein signature | 221 | 239 | IPR002229 | GO:0005887 | |
Cma03g00646 | 467 | ProSitePatterns | Ammonium transporters signature. | 182 | 207 | IPR018047 | GO:0008519|GO:0016020|GO:0072488 | |
Cma03g00646 | 467 | PANTHER | AMMONIUM TRANSPORTER MEP2 | 12 | 465 | IPR001905 | GO:0008519|GO:0016020|GO:0072488 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00646 | Cma-Chr3:5495475 | Cma05g00406 | Cma-Chr5:1788453 | 0 | dispersed | |
Cma03g00646 | Cma-Chr3:5495475 | Cma06g00216 | Cma-Chr6:1102589 | 4.15E-166 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma03g00646 | K03320 | - | csv:101218977 | 892.493 |