Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00646 ATGAGTTCCTGTATGCTTCAAGACCATGGCTTGCGCCCGGGGCTTGCTGCTGCAGACCAATCAATTCCCTACTGGAACAACAAGGCCGACAATGCATGGCAGCTCACGGCAGCCACCATGGTCGGCCTCCAAACTGTTCCGGGGCTGGTCATCCTCTACGGCAGCATGGTGAAGAAAAAATGGGCTGTCAACTCCGCCTTCATGGCACTCTATGGCTTCGCTTCTGTGCTCGTCTGTTGGGTATTGTGGGCACATCGTATGGCATTCGGTGACCGATTGTTCTGGCTCATTGGTGTGCCAGGTGTAGCGCTGTCTGAAGGGTACCTTCTTTCACATTCTACACAAGGCTGTTTCCCAATGGCTGACTACGTGTTTTTCCAGTTCGCTTTCGCCGCCATTACTGTCGTGTTGCTCGCCGGGTCCTTGCTGGGAAGGATGAATTTTGGTGCATGGATGCTTTTTGTTCCAATGTGGCTAACTGTTTGTTACACTGTTGGGGCATTCTGTATATGGGGGAATGGGTTTATTCAGAAGTACCTCATTGATTACGCCGGCGGCTATGTCATTCATCTTTCTTCTGGGGTGGCTGGTTTCACTGCCGCTTACTGGGTCGGGCCACGACACTCCCGCGACAGGCAGAGCTTCCCACCAAACAACATACTGCACATGGTATTCGGTGCAGGGTTTCTTTGGCTGGGTTGGACTGGATTCAATGGAGGAGCTCCATTTGCAGCGGGTCGGATTACATCGCTAGCCATTTTGAACACGCATATTTGCACTGCAACAAGTCTGTTGATCTGGGTTTCAATGGACATCATAGTATACAAGAAAAGCTCTGTGATTGGTGCAGTTCAAGGGATCATCACTGGCCTTGTCTGTATCACTCCTGGTGCAGTCGCAGCTGTGGTGATGGGCGTGCTTGCTGGTTTGGTTCCATGGTACACCATGATGGTGCTGCACAGGAAGCTGGCATTCCTTCAGTGTGTCGACGATACTCTGGGTGTCTTCCACACACATGCTGTGGCTGGCTCCATGGGAGGACTCCTCACAGGTTTCTTTGCTAAACCCAGCCTTCTGAGAATGATGTATCCAGATTCTCTATACGGTCCAGGCTTCCTGTATGCCATCTCCAATAGAAAGCTCAAAGATGGCCTCAAACAAATTGGCATCCAGTTCGCTGGAGCAGTGTTTATCACCCTCTGGAATGCCATCTTTACCAGCATTATCTGTTACCTGATTAGCCATATTGTTAACTTAAGAATGAAAGAAGAGGACCTGGAAATAGGCGACGACGCTGCTCATGGAGAAGAACCCTATGCATTGTGGGGCGACGGAGAGAAGATGCCATCTTCATTTCGTCTTCCACACACCCCTAGGTTCCCATCATTATGCAGGTGGGATTAG 1404 50.5 MSSCMLQDHGLRPGLAAADQSIPYWNNKADNAWQLTAATMVGLQTVPGLVILYGSMVKKKWAVNSAFMALYGFASVLVCWVLWAHRMAFGDRLFWLIGVPGVALSEGYLLSHSTQGCFPMADYVFFQFAFAAITVVLLAGSLLGRMNFGAWMLFVPMWLTVCYTVGAFCIWGNGFIQKYLIDYAGGYVIHLSSGVAGFTAAYWVGPRHSRDRQSFPPNNILHMVFGAGFLWLGWTGFNGGAPFAAGRITSLAILNTHICTATSLLIWVSMDIIVYKKSSVIGAVQGIITGLVCITPGAVAAVVMGVLAGLVPWYTMMVLHRKLAFLQCVDDTLGVFHTHAVAGSMGGLLTGFFAKPSLLRMMYPDSLYGPGFLYAISNRKLKDGLKQIGIQFAGAVFITLWNAIFTSIICYLISHIVNLRMKEEDLEIGDDAAHGEEPYALWGDGEKMPSSFRLPHTPRFPSLCRWD 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5495475 5497121 + CmaCh03G006460.1 Cma03g00646 290217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00646 467 SUPERFAMILY Ammonium transporter 25 421 - -
Cma03g00646 467 Pfam Ammonium Transporter Family 32 439 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cma03g00646 467 Gene3D Ammonium transporter AmtB like domains 12 442 IPR029020 -
Cma03g00646 467 PANTHER AMMONIUM TRANSPORTER 12 465 - -
Cma03g00646 467 PRINTS Rhesus blood group protein signature 252 274 IPR002229 GO:0005887
Cma03g00646 467 PRINTS Rhesus blood group protein signature 127 143 IPR002229 GO:0005887
Cma03g00646 467 PRINTS Rhesus blood group protein signature 221 239 IPR002229 GO:0005887
Cma03g00646 467 ProSitePatterns Ammonium transporters signature. 182 207 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cma03g00646 467 PANTHER AMMONIUM TRANSPORTER MEP2 12 465 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00646 Cma-Chr3:5495475 Cma05g00406 Cma-Chr5:1788453 0 dispersed
Cma03g00646 Cma-Chr3:5495475 Cma06g00216 Cma-Chr6:1102589 4.15E-166 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00646 K03320 - csv:101218977 892.493