Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00651 ATGGCGGAAAGTTCAGAAGAGGTCTATCTCCATGGCGATCTCGACCTTAAAATCTTCGAGGCCACCCAGTTGCCTAACATGGACATAGTATCCGAGCGTCTTCGTCGTTGCTTCACTGCTTGTGGTACTCTCAACTACTCCGCCATTAAATCCGTCGCTACCAACTCACGTTCTGCCGCCGGCGAGGGGAAAGTCCACCACAGCCATGGAAAAATCATCACCAGTGACCCATATGTTACCGTCCGGGTTCCTCAAGCCACCGTCGCGCGAACTCGCGTTATTAAGAATTCCCAAAACCCCAATTGGAACGAGCATTTCGTTATCCCTCTTGCACAGAAAATGGCCGAGTTGGAATTTCAGGTGAAGGACGATGATGTCTTTGGCGCTGAAGTTATGGGGACAGTCAAAATCCCGGCTCAGCAAATTGCCTCTGGTCAGACAATTAGTGGGTGGTTTACGGTGCTTGGCTCAAATGGGAAGCCACCGAAGCCCGGCACGTCACTACGAATCGAAATGAAGTTCACCCCCGTTGAAAAGAATCCGGTGTATCGCCACGGCATTGCTGGAGATCCGGAGCATAAGGGTGTGCAGCACACTTATTTTCCGGTGAGAAGAGGCAGCTCCATGAGATTGTACCAAGATGCTCATGTGCCTGATGGGATGCTGCCGGTGATTGAATTGGATGGAAAGAATGTTTATAGACAAGACAACTGTTGGGAGGATATCTGCCATGCTATATCAGAGGCTCATCATATGATTTATATCGTTGGTTGGTCAGTTTTTCATAAGATCAAGCTGGTTAGAGAGACAAGCAGGCCGTTGCCACGAGGTGGGGATCTTATTCTTGGTGATCTCCTCAAATACAAATCAGAAGAGGGCGTTCGAGTATTGATGATGATTTGGGATGATAAGACTTCTCATGATAAGTTCTTCATCAATACGGGGGGATTGATGCAGACACACGACGAGGAAACGAAGAAATTTTTCAAGCATTCTTCAGTGATCTGTGTGCTCTCACCTCGCTATCCAAGCAGCAAGCTAAGCTATGTGAAACAAAAGGTTGTAGGCACTGTCTTCACGCATCATCAGAAATGTGTCCTTGTTGATACTCAAGGATATGGTAATAATAGGAAGATCACTGCTTTTCTTGGAGGTCTTGATCTCTGTGATGGTCGTTACGATACACCCGAGCATCGACTATTCCATGGCCTCGACACGGTATTTAAGGATGATTTTCGTAATCCTACATTCCCTGGAGCCAAAGCTCCAAGGCAACCATGGCATGACTTGCACTGTCGGATTGATGGGCCAGCTGCATATGACGTGCTTATAAACTTTGAGCAACGTTGGAGCCGAGCCACAAGATGGACCGAGTTTGGCCTACGCTGCAGGAACATTACTCACTGGCGCGATGCTTTAATCAAGATAGAGCGCATATCATGGATACTAAGCCCTCACATAACCATCTTAGCAGATGGTTCAATAAAAGTTCCAGAGGATGACCCCAAAGTATATGTTTCAAACGAAAAAGATCCTGAAAACTGGCATGTTCAGATTTTTCGATCCATCGACTCGGGATCGGTTAAAGGATTCCCAAGAGATGTCCATGTCGCGGAGTCGCAGAACCTTGTATGTGCCAAAAACTTGGCTATAGAGAAAAGCATTGAAATGGCATATATCCAGGCTATCCGATCGGCGCAACGTTTCATTTACATCGAAAACCAGTATTTTATAGGATCATCATATGGATGGCCGGGATATAAAAATGCCGGGGCTGATAATCTCATTCCCATGGAGTTGGCCCTTAAGATTGCAAGCAAAATAAGAGCCAATGAAAGATTTGTTGTGTATATTGTCATACCAATGTGGCCTGAGGGAGATCCCAATAGCGCTCCCATGCAAGAGATTCTTTATTGGCAGGGACAAACCATGCAAATGATGTATGACATTGTTGCAAGTGAGCTGAAATCATCAGAGCAACCATATTTGCACCCTCAGGACTATCTAAACTTCTACTGCCTTGGCAAACGGGAAAAAGTTCCAGAGAATGGGCCAACCACTGATGATGCAACGGTATCTAATTCAATAAAACATCAACGGTTTATGATTTACGTGCACGCCAAGGGGATGATAGTAGATGATGAATACGTAATTATTGGGTCTGCAAATATTAACCAACGATCTATGGCTGGAACGAAGGACACCGAGATAGCCACGGGCGCATATCAGCCACATCACACGTGGACGAAGAAAAAGAAACACCCACATGGTCAGATTTATGGATACAGAATGTCGTTATGGAGCGAGCATCTCGGAATGCTCGATCCATGTTTCAACGAGCCAGAAACTTTGGAATGTGTAAGAAGAGTGAATGGGGTAGCTGAGGATAACTGGAAGCGATTCACCGCCGATGAATTCACGACGTTGCAAGGCCACCTCCTCCGGTATCCGGTGCTCGTGGATGACAATGGGAGAGTCAGCCCTCTGCCTGGACATGAAAACTTCCCTGATGTAGGAGGGAAGATAATAGGATCTCATTCAGCTGCAATGCCTGATGTTGTGACCACATAG 2571 46.32 MAESSEEVYLHGDLDLKIFEATQLPNMDIVSERLRRCFTACGTLNYSAIKSVATNSRSAAGEGKVHHSHGKIITSDPYVTVRVPQATVARTRVIKNSQNPNWNEHFVIPLAQKMAELEFQVKDDDVFGAEVMGTVKIPAQQIASGQTISGWFTVLGSNGKPPKPGTSLRIEMKFTPVEKNPVYRHGIAGDPEHKGVQHTYFPVRRGSSMRLYQDAHVPDGMLPVIELDGKNVYRQDNCWEDICHAISEAHHMIYIVGWSVFHKIKLVRETSRPLPRGGDLILGDLLKYKSEEGVRVLMMIWDDKTSHDKFFINTGGLMQTHDEETKKFFKHSSVICVLSPRYPSSKLSYVKQKVVGTVFTHHQKCVLVDTQGYGNNRKITAFLGGLDLCDGRYDTPEHRLFHGLDTVFKDDFRNPTFPGAKAPRQPWHDLHCRIDGPAAYDVLINFEQRWSRATRWTEFGLRCRNITHWRDALIKIERISWILSPHITILADGSIKVPEDDPKVYVSNEKDPENWHVQIFRSIDSGSVKGFPRDVHVAESQNLVCAKNLAIEKSIEMAYIQAIRSAQRFIYIENQYFIGSSYGWPGYKNAGADNLIPMELALKIASKIRANERFVVYIVIPMWPEGDPNSAPMQEILYWQGQTMQMMYDIVASELKSSEQPYLHPQDYLNFYCLGKREKVPENGPTTDDATVSNSIKHQRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIATGAYQPHHTWTKKKKHPHGQIYGYRMSLWSEHLGMLDPCFNEPETLECVRRVNGVAEDNWKRFTADEFTTLQGHLLRYPVLVDDNGRVSPLPGHENFPDVGGKIIGSHSAAMPDVVTT 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5505034 5511398 - CmaCh03G006510.1 Cma03g00651 290222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00651 856 SMART pld_4 701 728 IPR001736 GO:0003824
Cma03g00651 856 SMART pld_4 357 392 IPR001736 GO:0003824
Cma03g00651 856 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 177 IPR035892 -
Cma03g00651 856 Gene3D Endonuclease Chain A 226 465 - -
Cma03g00651 856 Gene3D C2 domain 11 184 IPR035892 -
Cma03g00651 856 SUPERFAMILY Phospholipase D/nuclease 210 459 - -
Cma03g00651 856 Gene3D Endonuclease Chain A 525 751 - -
Cma03g00651 856 Pfam Phospholipase D C terminal 776 845 IPR024632 -
Cma03g00651 856 SMART C2_3c 13 151 IPR000008 -
Cma03g00651 856 PANTHER PHOSPHOLIPASE D 5 855 IPR015679 -
Cma03g00651 856 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 357 392 IPR001736 GO:0003824
Cma03g00651 856 ProSiteProfiles C2 domain profile. 1 152 IPR000008 -
Cma03g00651 856 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 701 728 IPR001736 GO:0003824
Cma03g00651 856 Pfam C2 domain 12 153 IPR000008 -
Cma03g00651 856 SUPERFAMILY Phospholipase D/nuclease 552 785 - -
Cma03g00651 856 PIRSF PLD_plant 1 856 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cma03g00651 856 CDD C2_plant_PLD 8 175 - -
Cma03g00651 856 Pfam Phospholipase D Active site motif 357 392 IPR001736 GO:0003824
Cma03g00651 856 Pfam Phospholipase D Active site motif 702 728 IPR001736 GO:0003824
Cma03g00651 856 PANTHER PHOSPHOLIPASE D DELTA 5 855 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00651 Cma-Chr3:5505034 Cma05g00328 Cma-Chr5:1422755 0 dispersed
Cma08g01245 Cma-Chr8:7606619 Cma03g00651 Cma-Chr3:5505034 2.12E-18 dispersed
Cma17g00346 Cma-Chr17:1870475 Cma03g00651 Cma-Chr3:5505034 3.66E-19 dispersed
Cma03g00651 Cma-Chr3:5505034 Cma07g00400 Cma-Chr7:1719675 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00651 K01115 - csv:101217251 1603.57