Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma03g00656 | ATGAACACCAGAGAAGGAGGCGGTTATCAGATTGAGGAGTTTTGCTGCTTTGAATTCTTGATGAACTTTCTGAGGGCTTGCTGGCTGCCGTCCTCGGACAATATCGTACACAGCGGTTCGGATTCAGCAGGTCGTCGTGAAGGCTTACTATGGTACAAGGATATTGGACAGCACATGAATGGTGAATTTTCAATGGCTGTTGTCCAGGCTAATAACTTGCTTGAGGATCAAAGCCAGATCGAATCAGGTTCATTGAGCTTGGTTGAATCCGGGCCATATGGAACCTTTATTGGTGTTTATGACGGTCATGGTGGACCTGAAGCATCAAATTACATATATGATAATCTTTTCCAGCATCTAAAAAGGTTCACCTCAGAACAACAATCAATGTCATCTGATGTGATAAAGAAAGCATTTCAAGCTACAGAGGAAGGGTTCATTTCTTTAGTGACTAAACAATGGCAAATGAAGCCCCAAATTGCAGCTGTTGCTTCATGTTGCCTGGTTGGTGTGATCTGTGGTGGCACCCTTTACATAGCCAACCTTGGCGATTCCCGTGCCGTGCTTGGAAGGGTCATGCGTGCAACGGAGGAGGTTATCGCCGTGCAGCTATCAGCTGAGCATAATGTGAGCATAGAATCTGTCAGAAGGGAGATGCATTCTCTGCACCCAGATGACTCGCATATAGTAGTTTTGAAGCATAATGTATGGCGAGTAAAGGGCTTAATACAGGTTTCCAGATCTATCGGTGATGCATATTTAAAGAGGGCGGAATTCAACAGGGAACCCTTGTATGCTAAGTTTAGGCTTCGTGAACCATTTACTCGACCGATACTGAGCTGTGAACCATCAATTTCGGTGCATGAACTTCAACCACATGATCAATTCATTATATTTGCCTCTGATGGCATGTGGGAGCACATTAGCAATCAGCAAGCTGTAGATATTATTCGAAATCACCCCCATAATGGAAGTGCTAAGAGGTTGGTAAAAGCTGCTATGCTGGAAGCAGCTAAGAAACGAGAAATGCGATATTCAGATTTGAAGGAAATTGATCGTGGTGTACGCCGCCATTTTCACGACGACATCACTGTCATAGTTGTATTTCTCGACTCTAATCTTGTAAGCAGAGCGAGCACGGTCCGAGGTCCAACCATGTCTTTGAGAGGGCGCGGGGTTATCATACCTACAAAATCTCTAGCTCCTTGTGCCACACCTACAGAGCTTCACACAATCTGA | 1239 | 44.79 | MNTREGGGYQIEEFCCFEFLMNFLRACWLPSSDNIVHSGSDSAGRREGLLWYKDIGQHMNGEFSMAVVQANNLLEDQSQIESGSLSLVESGPYGTFIGVYDGHGGPEASNYIYDNLFQHLKRFTSEQQSMSSDVIKKAFQATEEGFISLVTKQWQMKPQIAAVASCCLVGVICGGTLYIANLGDSRAVLGRVMRATEEVIAVQLSAEHNVSIESVRREMHSLHPDDSHIVVLKHNVWRVKGLIQVSRSIGDAYLKRAEFNREPLYAKFRLREPFTRPILSCEPSISVHELQPHDQFIIFASDGMWEHISNQQAVDIIRNHPHNGSAKRLVKAAMLEAAKKREMRYSDLKEIDRGVRRHFHDDITVIVVFLDSNLVSRASTVRGPTMSLRGRGVIIPTKSLAPCATPTELHTI | 412 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 5525611 | 5529469 | - | CmaCh03G006560.1 | Cma03g00656 | 290227 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma03g00656 | 412 | ProSitePatterns | PPM-type phosphatase domain signature. | 96 | 104 | IPR000222 | GO:0043169 | |
| Cma03g00656 | 412 | Gene3D | - | 52 | 380 | IPR036457 | - | |
| Cma03g00656 | 412 | PANTHER | ALPHABET, ISOFORM E-RELATED | 20 | 400 | - | - | |
| Cma03g00656 | 412 | SMART | PP2C_4 | 56 | 368 | IPR001932 | - | |
| Cma03g00656 | 412 | PANTHER | PROTEIN PHOSPHATASE 2C 60-RELATED | 20 | 400 | - | - | |
| Cma03g00656 | 412 | CDD | PP2Cc | 63 | 370 | IPR001932 | - | |
| Cma03g00656 | 412 | SUPERFAMILY | PP2C-like | 71 | 371 | IPR036457 | - | |
| Cma03g00656 | 412 | ProSiteProfiles | PPM-type phosphatase domain profile. | 62 | 370 | IPR001932 | - | |
| Cma03g00656 | 412 | Pfam | Protein phosphatase 2C | 95 | 341 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma02g00269 | Cma-Chr2:1227050 | Cma03g00656 | Cma-Chr3:5525611 | 0 | dispersed | |
| Cma03g00656 | Cma-Chr3:5525611 | Cma20g00740 | Cma-Chr20:3468634 | 0 | dispersed | |
| Cma06g00101 | Cma-Chr6:548599 | Cma03g00656 | Cma-Chr3:5525611 | 4.22E-149 | dispersed | |
| Cma06g00339 | Cma-Chr6:1578877 | Cma03g00656 | Cma-Chr3:5525611 | 9.27E-180 | dispersed | |
| Cma11g01366 | Cma-Chr11:9047629 | Cma03g00656 | Cma-Chr3:5525611 | 0 | wgd | |
| Cma16g01252 | Cma-Chr16:9468656 | Cma03g00656 | Cma-Chr3:5525611 | 0 | wgd | |
| Cma03g00656 | Cma-Chr3:5525611 | Cma07g00403 | Cma-Chr7:1743228 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma03g00656 | K01102 | - | csv:101219696 | 734.947 |