Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma03g00671 ATGGGTTGCTGTTACTCGAGATTAGAGAGAGAAGAGACTGTTTCCAGGTGTAAAGCAAGAAAGAGGTACATGAAACAGCTGGTGAAGGCGAGGCAAGCTTTTTCTGCTACTCACAGCTTGTATATTCGTTCTCTTCGTGGCACCGGCGCTGCTCTCCGGCAGTTTTCCAATGCAGAGACCTACATCCGCCGCCCTCAGCAGCAGCAGCAGCACCACCACCACCACCTTCCGCCAGTGCTTCCATCTCCAACCCCACGAACGCCGCCGCCGCCTCTACCTATCCCCATGAGTCCAAGTTCTGACACCTGGACATCGATCACGGCATCCCCGGCATTGCCTCCTCCGCCGCCGCCGCCGCCGTCCTCCACATGGGATTTCTGGGACCCTTTTGTGCCATCGTCATCTCGCACTGTGACTGAGGAAGAATGGGAGGCTACCACCACTGCATCGGAGGCTATGGTCACTGTAACTGGGGCAGCGAGCTCAGCGCCGCCACCGTCAGTGGTGAGTGGTTTTTCAAAGGACACATCGAGCACTGAGCTTGCCATGGTAGTGTCGAGGAACACCAAAGATCTAGTGGAGATTATCAAGGAGCTTGATGAGTACTTTCTCAAAGCTGCCGATGCTGGTGCTCAGCTCTCTTCGCTTTTGGAAGTCCCCACTTTTTCTTCTCAGAAAAAAGGAGGGCAGGTTTACAATAATGGGTGGAGCTTGAGCCCTACGTTGAGGATGTGGGGTTCAAACACAACACCACCAAATGCATTTGGTAAGTTAAATGGAGAAATAACAACACCAAATATGGGAAATGGATGTGCTGGGAATAGTGGCAGCCACTGCTCCACAGTGGAGAAGCTGTACGCCTGGGAAAAAAAATTGTACCAGGAGGTGAAGAATGCTGAGGCCATAAGGATAGAGCATGAGAAGAAGTTGGAACAATTGAGGAAGCTAGAGCTGAAGAGGGCTGACTATGTAAAGACTGAGAAGACTAAGAAGGAGGTTGAGAAGCTGGAGTCACAGATGATGGTTGCTTCCCAGGCCATTGAAACCACATCAGCTGAAATCGTCAAGCTAAGAGAAACTGAGCTCTATCCACAACTCCTTGAGCTTGTCAAAGGATTGATGTGCATGTGGAGAAGTATGTACGAGTCTCATCAGGTTCAAACACACATTGTTGAACAGCTAAAATATCTAAACATCATACCATCAGCCGATCCCACATCCGAGATCCACCGCCAATCAACTCTCCAGCTTGAGCTTGAAGTCCAGCAATGGCATGCTTCTTTTTGCAATCTAGTGAAAGCTCAACGGGATTATGTCCAATCTCTTACAGCCTGGCTTCGGCTTTGCCTTTTACAGATTAGTGGAACCCCATTATTAAGAACAGGTCAAGATTCTAGAATTTACTCACTTTGTGAAGAATGGAACCTCGCAGTTGATAGGATTCCAGACAAAGTGGCTTCTGAAGGAATCAAGAGCTTCTTAACAGTAGTTCAGGCCATTGTTGTTCAACAAGCTGAGGAACATAAGCAAAAGAAGAAGGCGGATTCTGCCTCGAAAGAGCTTGAAAAGAGAGCTACCCAGCTAAGATCACTAGAAAGCAAATATGTCTCACATTCCATGCGAGAATGTTCAGCATCCACGAGAGGGAGAGACCCAGTTCAGGAGAAGCAAAATAAGGTGGAAAACTTGAGAGCAAAAGCTCGAGATGAGAAACAAAAGCATGAAAACTTGGTCAGTGTGACCAGGTCAATGACAATAAATAATTTGCAGATGAGTTTTCCCCATGTTTTCCAGGCAATGGTGGGGTTTTCTAGCGTATGTATGCACGCATATGAAGCAGTTTACAATCAAACTAAAAATCCTGACCTGCATGAGAAAGGGGGGTTTTGCTGGAAAGAGTGGAAGGAGAAATCTGACAAAACTTCATTCATTTTGATTGAAGATTTCATTAGGATAATGGAAACGAGGCGGCAAGTGGGCTACTTTGCTCGCTTTTACAAAGGGGGTAGGAATGGCTGCGCCAGCTCATCTGAATTGCTGTGGAGATTACAAAACAGGCTAGGGGTTTTGTAG 2073 47.47 MGCCYSRLEREETVSRCKARKRYMKQLVKARQAFSATHSLYIRSLRGTGAALRQFSNAETYIRRPQQQQQHHHHHLPPVLPSPTPRTPPPPLPIPMSPSSDTWTSITASPALPPPPPPPPSSTWDFWDPFVPSSSRTVTEEEWEATTTASEAMVTVTGAASSAPPPSVVSGFSKDTSSTELAMVVSRNTKDLVEIIKELDEYFLKAADAGAQLSSLLEVPTFSSQKKGGQVYNNGWSLSPTLRMWGSNTTPPNAFGKLNGEITTPNMGNGCAGNSGSHCSTVEKLYAWEKKLYQEVKNAEAIRIEHEKKLEQLRKLELKRADYVKTEKTKKEVEKLESQMMVASQAIETTSAEIVKLRETELYPQLLELVKGLMCMWRSMYESHQVQTHIVEQLKYLNIIPSADPTSEIHRQSTLQLELEVQQWHASFCNLVKAQRDYVQSLTAWLRLCLLQISGTPLLRTGQDSRIYSLCEEWNLAVDRIPDKVASEGIKSFLTVVQAIVVQQAEEHKQKKKADSASKELEKRATQLRSLESKYVSHSMRECSASTRGRDPVQEKQNKVENLRAKARDEKQKHENLVSVTRSMTINNLQMSFPHVFQAMVGFSSVCMHAYEAVYNQTKNPDLHEKGGFCWKEWKEKSDKTSFILIEDFIRIMETRRQVGYFARFYKGGRNGCASSSELLWRLQNRLGVL 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5581029 5584286 - CmaCh03G006710.1 Cma03g00671 290242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma03g00671 690 Coils Coil 553 580 - -
Cma03g00671 690 Coils Coil 326 353 - -
Cma03g00671 690 PANTHER SERINE HYDROXYMETHYLTRANSFERASE, PUTATIVE (DUF632)-RELATED 1 617 - -
Cma03g00671 690 Coils Coil 511 534 - -
Cma03g00671 690 Coils Coil 296 319 - -
Cma03g00671 690 Pfam Protein of unknown function (DUF630) 1 59 IPR006868 -
Cma03g00671 690 MobiDBLite consensus disorder prediction 63 126 - -
Cma03g00671 690 PANTHER UNCHARACTERIZED 1 617 - -
Cma03g00671 690 Pfam Protein of unknown function (DUF632) 192 498 IPR006867 -
Cma03g00671 690 MobiDBLite consensus disorder prediction 109 125 - -
Cma03g00671 690 MobiDBLite consensus disorder prediction 78 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma03g00671 - - - cmos:111453500 1090.1
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00671 Cma20g00739 CCT
Cma03g00671 Cma07g00413 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00671 Cma-Chr3:5581029 Cma17g00522 Cma-Chr17:3571296 3.66E-09 dispersed
Cma14g01312 Cma-Chr14:10315858 Cma03g00671 Cma-Chr3:5581029 9.70E-12 dispersed
Cma03g00671 Cma-Chr3:5581029 Cma07g00413 Cma-Chr7:1788521 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1147 . . . . . . . . . . Cma03g00671 Cma07g00413 Car03g00617 Car07g00363 . Cpe19g00870 Cpe10g00677 Bhi03g00838 . . . . . . Cla01g01993 Cam01g2092 Cec04g1749 Cco04g1814 . Cmu01g1986 Cre04g1663 Cone8ag0861 Cone12ag0824 . . Lsi01g00583 . . Cme08g00949 Blo05g00705 . . . . Bpe06g00133 . . . Cmo03g00696 Cmo07g00409 . Cma20g00739 . . . . . . . . . . . . . . . . . . . Csa06g03347 Chy02g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007876 1 3 1 1 1 1 2 1 1 1 1 0 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma03g00671 Cma_Chr03 FPKM 4.086286 4.010123 1.679816 1.755257 7.440289 6.702159 7.08081 0.88986 0.806049 0.947203